* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/dodgr.Rcheck’ * using R Under development (unstable) (2025-02-15 r87723) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) * running under: Fedora Linux 40 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘dodgr/DESCRIPTION’ ... OK * this is package ‘dodgr’ version ‘0.4.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘dodgr’ can be installed ... [272s/225s] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/dodgr-00install.html' for details. * used C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [29s/42s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... INFO GNU make is a SystemRequirements. * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [132s/138s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [111s/124s] ERROR Running ‘sc-conversion-fns.R’ Running ‘testthat.R’ [110s/122s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(dodgr) > > test_check("dodgr") [ FAIL 13 | WARN 0 | SKIP 11 | PASS 229 ] â•â• Skipped tests (11) â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â• • !test_all is TRUE (7): 'test-cache.R:10:1', 'test-centrality.R:7:1', 'test-graph-fns.R:6:1', 'test-iso.R:51:1', 'test-match-pts-fns.R:4:1', 'test-sc.R:6:1', 'test-streetnet.R:129:5' • On CRAN (4): 'test-cycles.R:3:1', 'test-flows.R:6:1', 'test-save-load.R:3:1', 'test-streetnet.R:196:5' â•â• Failed tests â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â• ── Failure ('test-dists-categorical.R:12:5'): categorical dists ──────────────── `graph <- weight_streetnet(hampi)` produced messages. ── Failure ('test-dists-categorical.R:97:5'): categorical dists summary ──────── `graph <- weight_streetnet(hampi)` produced messages. ── Failure ('test-dists-categorical.R:116:5'): proportions only ──────────────── `graph <- weight_streetnet(hampi)` produced messages. ── Failure ('test-dists-categorical.R:144:5'): categorical threshold ─────────── `graph <- weight_streetnet(hampi)` produced messages. ── Failure ('test-dists-categorical.R:166:5'): categorical pairwise ──────────── `graph <- weight_streetnet(hampi)` produced messages. ── Failure ('test-dists-nearest.R:10:5'): categorical nearest dists ──────────── `graph <- weight_streetnet(hampi)` produced messages. ── Failure ('test-dists.R:11:5'): dists ──────────────────────────────────────── `graph <- weight_streetnet(hampi)` produced messages. ── Failure ('test-dists.R:79:5'): dists-pairwise ─────────────────────────────── `graph <- weight_streetnet(hampi)` produced messages. ── Failure ('test-dists.R:328:5'): graph columns ─────────────────────────────── `graph <- weight_streetnet(hampi)` produced messages. ── Failure ('test-dists.R:351:5'): graph columns ─────────────────────────────── `graph <- weight_streetnet(hampi)` produced messages. ── Failure ('test-dists.R:358:5'): negative weights ──────────────────────────── `graph <- weight_streetnet(hampi)` produced messages. ── Failure ('test-iso.R:17:5'): isodists ─────────────────────────────────────── Expected `net <- weight_streetnet(hsc, wt_profile = "bicycle")` to run without any messages. ℹ Actually got a <simpleMessage> with text: Superclass process has cloneable=FALSE, but subclass r_process has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for r_process. ── Error ('test-iso.R:22:5'): isodists ───────────────────────────────────────── Error in `eval(code, test_env)`: object 'net' not found Backtrace: â–† 1. └─base::sample(net$.vx0, size = npts) at test-iso.R:22:5 [ FAIL 13 | WARN 0 | SKIP 11 | PASS 229 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [96s/112s] OK * checking PDF version of manual ... [12s/18s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR