* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/dodgr.Rcheck’
* using R Under development (unstable) (2025-02-15 r87723)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘dodgr/DESCRIPTION’ ... OK
* this is package ‘dodgr’ version ‘0.4.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘dodgr’ can be installed ... [272s/225s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/dodgr-00install.html' for details.
* used C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [29s/42s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... INFO
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [132s/138s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [111s/124s] ERROR
  Running ‘sc-conversion-fns.R’
  Running ‘testthat.R’ [110s/122s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(dodgr)
  > 
  > test_check("dodgr")
  [ FAIL 13 | WARN 0 | SKIP 11 | PASS 229 ]
  
  ══ Skipped tests (11) ══════════════════════════════════════════════════════════
  • !test_all is TRUE (7): 'test-cache.R:10:1', 'test-centrality.R:7:1',
    'test-graph-fns.R:6:1', 'test-iso.R:51:1', 'test-match-pts-fns.R:4:1',
    'test-sc.R:6:1', 'test-streetnet.R:129:5'
  • On CRAN (4): 'test-cycles.R:3:1', 'test-flows.R:6:1', 'test-save-load.R:3:1',
    'test-streetnet.R:196:5'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-dists-categorical.R:12:5'): categorical dists ────────────────
  `graph <- weight_streetnet(hampi)` produced messages.
  ── Failure ('test-dists-categorical.R:97:5'): categorical dists summary ────────
  `graph <- weight_streetnet(hampi)` produced messages.
  ── Failure ('test-dists-categorical.R:116:5'): proportions only ────────────────
  `graph <- weight_streetnet(hampi)` produced messages.
  ── Failure ('test-dists-categorical.R:144:5'): categorical threshold ───────────
  `graph <- weight_streetnet(hampi)` produced messages.
  ── Failure ('test-dists-categorical.R:166:5'): categorical pairwise ────────────
  `graph <- weight_streetnet(hampi)` produced messages.
  ── Failure ('test-dists-nearest.R:10:5'): categorical nearest dists ────────────
  `graph <- weight_streetnet(hampi)` produced messages.
  ── Failure ('test-dists.R:11:5'): dists ────────────────────────────────────────
  `graph <- weight_streetnet(hampi)` produced messages.
  ── Failure ('test-dists.R:79:5'): dists-pairwise ───────────────────────────────
  `graph <- weight_streetnet(hampi)` produced messages.
  ── Failure ('test-dists.R:328:5'): graph columns ───────────────────────────────
  `graph <- weight_streetnet(hampi)` produced messages.
  ── Failure ('test-dists.R:351:5'): graph columns ───────────────────────────────
  `graph <- weight_streetnet(hampi)` produced messages.
  ── Failure ('test-dists.R:358:5'): negative weights ────────────────────────────
  `graph <- weight_streetnet(hampi)` produced messages.
  ── Failure ('test-iso.R:17:5'): isodists ───────────────────────────────────────
  Expected `net <- weight_streetnet(hsc, wt_profile = "bicycle")` to run without any messages.
  ℹ Actually got a <simpleMessage> with text:
    Superclass process has cloneable=FALSE, but subclass r_process has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for r_process.
    
  ── Error ('test-iso.R:22:5'): isodists ─────────────────────────────────────────
  Error in `eval(code, test_env)`: object 'net' not found
  Backtrace:
      â–†
   1. └─base::sample(net$.vx0, size = npts) at test-iso.R:22:5
  
  [ FAIL 13 | WARN 0 | SKIP 11 | PASS 229 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [96s/112s] OK
* checking PDF version of manual ... [12s/18s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR