* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/depigner.Rcheck’
* using R Under development (unstable) (2025-02-14 r87716)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘depigner/DESCRIPTION’ ... OK
* this is package ‘depigner’ version ‘0.9.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘depigner’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/depigner-00install.html' for details.
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s/13s] OK
* checking Rd files ... NOTE
checkRd: (-1) install_pkg_set.Rd:24: Lost braces; missing escapes or markup?
    24 | can use some sets already prepared and included into `{depigner}`
       |                                                       ^
checkRd: (-1) pkg_sets.Rd:65: Lost braces; missing escapes or markup?
    65 | the sets (that is the reason why, e.g., you do not see `{shiny}` or
       |                                                         ^
checkRd: (-1) pkg_sets.Rd:71: Lost braces; missing escapes or markup?
    71 | `{beepr}`, `{fortunes}`, and `{telegram.bot}`.
       |  ^
checkRd: (-1) pkg_sets.Rd:71: Lost braces; missing escapes or markup?
    71 | `{beepr}`, `{fortunes}`, and `{telegram.bot}`.
       |             ^
checkRd: (-1) pkg_sets.Rd:71: Lost braces; missing escapes or markup?
    71 | `{beepr}`, `{fortunes}`, and `{telegram.bot}`.
       |                               ^
checkRd: (-1) pkg_sets.Rd:73: Lost braces; missing escapes or markup?
    73 | \item \code{pkg_utils}: Utilities for data analyses, including `{here}`,
       |                                                                 ^
checkRd: (-1) pkg_sets.Rd:74: Lost braces; missing escapes or markup?
    74 | `{lobstr}`, `{progress}`, `{progressr}`, `{readxl}`, `{tidyverse}`,
       |  ^
checkRd: (-1) pkg_sets.Rd:74: Lost braces; missing escapes or markup?
    74 | `{lobstr}`, `{progress}`, `{progressr}`, `{readxl}`, `{tidyverse}`,
       |              ^
checkRd: (-1) pkg_sets.Rd:74: Lost braces; missing escapes or markup?
    74 | `{lobstr}`, `{progress}`, `{progressr}`, `{readxl}`, `{tidyverse}`,
       |                            ^
checkRd: (-1) pkg_sets.Rd:74: Lost braces; missing escapes or markup?
    74 | `{lobstr}`, `{progress}`, `{progressr}`, `{readxl}`, `{tidyverse}`,
       |                                           ^
checkRd: (-1) pkg_sets.Rd:74: Lost braces; missing escapes or markup?
    74 | `{lobstr}`, `{progress}`, `{progressr}`, `{readxl}`, `{tidyverse}`,
       |                                                       ^
checkRd: (-1) pkg_sets.Rd:75: Lost braces; missing escapes or markup?
    75 | and `{writexl}`.
       |      ^
checkRd: (-1) pkg_sets.Rd:77: Lost braces; missing escapes or markup?
    77 | \item \code{pkg_speed}: Are you in a hurry?! This includes `{furrr}`,
       |                                                             ^
checkRd: (-1) pkg_sets.Rd:78: Lost braces; missing escapes or markup?
    78 | `{parallel}`, `snow`, and `{tidyfast}`.
       |  ^
checkRd: (-1) pkg_sets.Rd:78: Lost braces; missing escapes or markup?
    78 | `{parallel}`, `snow`, and `{tidyfast}`.
       |                            ^
checkRd: (-1) pkg_sets.Rd:81: Lost braces; missing escapes or markup?
    81 | `{keras}` nor `{tensorflow}` which require _ad hoc_ configuration).
       |  ^
checkRd: (-1) pkg_sets.Rd:81: Lost braces; missing escapes or markup?
    81 | `{keras}` nor `{tensorflow}` which require _ad hoc_ configuration).
       |                ^
checkRd: (-1) pkg_sets.Rd:82: Lost braces; missing escapes or markup?
    82 |  This includes `{caret}`, `{glmnet}`, `{mlr3}`, `{snow}`,
       |                 ^
checkRd: (-1) pkg_sets.Rd:82: Lost braces; missing escapes or markup?
    82 |  This includes `{caret}`, `{glmnet}`, `{mlr3}`, `{snow}`,
       |                            ^
checkRd: (-1) pkg_sets.Rd:82: Lost braces; missing escapes or markup?
    82 |  This includes `{caret}`, `{glmnet}`, `{mlr3}`, `{snow}`,
       |                                        ^
checkRd: (-1) pkg_sets.Rd:82: Lost braces; missing escapes or markup?
    82 |  This includes `{caret}`, `{glmnet}`, `{mlr3}`, `{snow}`,
       |                                                  ^
checkRd: (-1) pkg_sets.Rd:83: Lost braces; missing escapes or markup?
    83 |  `{tidymodels}`, `{tidytext}`, and `{tm}`.
       |   ^
checkRd: (-1) pkg_sets.Rd:83: Lost braces; missing escapes or markup?
    83 |  `{tidymodels}`, `{tidytext}`, and `{tm}`.
       |                   ^
checkRd: (-1) pkg_sets.Rd:83: Lost braces; missing escapes or markup?
    83 |  `{tidymodels}`, `{tidytext}`, and `{tm}`.
       |                                     ^
checkRd: (-1) pkg_sets.Rd:86: Lost braces; missing escapes or markup?
    86 | This includes `{CBPS}`, `{cobalt}`, `{dlnm}`, `{ggeffects}`,
       |                ^
checkRd: (-1) pkg_sets.Rd:86: Lost braces; missing escapes or markup?
    86 | This includes `{CBPS}`, `{cobalt}`, `{dlnm}`, `{ggeffects}`,
       |                          ^
checkRd: (-1) pkg_sets.Rd:86: Lost braces; missing escapes or markup?
    86 | This includes `{CBPS}`, `{cobalt}`, `{dlnm}`, `{ggeffects}`,
       |                                      ^
checkRd: (-1) pkg_sets.Rd:86: Lost braces; missing escapes or markup?
    86 | This includes `{CBPS}`, `{cobalt}`, `{dlnm}`, `{ggeffects}`,
       |                                                ^
checkRd: (-1) pkg_sets.Rd:87: Lost braces; missing escapes or markup?
    87 | `{MatchIt}`, `{mice}`, `{rms}`, `{twang}`, and `{WeightIt}`.
       |  ^
checkRd: (-1) pkg_sets.Rd:87: Lost braces; missing escapes or markup?
    87 | `{MatchIt}`, `{mice}`, `{rms}`, `{twang}`, and `{WeightIt}`.
       |               ^
checkRd: (-1) pkg_sets.Rd:87: Lost braces; missing escapes or markup?
    87 | `{MatchIt}`, `{mice}`, `{rms}`, `{twang}`, and `{WeightIt}`.
       |                         ^
checkRd: (-1) pkg_sets.Rd:87: Lost braces; missing escapes or markup?
    87 | `{MatchIt}`, `{mice}`, `{rms}`, `{twang}`, and `{WeightIt}`.
       |                                  ^
checkRd: (-1) pkg_sets.Rd:87: Lost braces; missing escapes or markup?
    87 | `{MatchIt}`, `{mice}`, `{rms}`, `{twang}`, and `{WeightIt}`.
       |                                                 ^
checkRd: (-1) pkg_sets.Rd:91: Lost braces; missing escapes or markup?
    91 | into `pkg_all`). This includes `{rstanarm}`, and `{brms}`.
       |                                 ^
checkRd: (-1) pkg_sets.Rd:91: Lost braces; missing escapes or markup?
    91 | into `pkg_all`). This includes `{rstanarm}`, and `{brms}`.
       |                                                   ^
checkRd: (-1) pkg_sets.Rd:93: Lost braces; missing escapes or markup?
    93 | \item \code{pkg_devel}: Develop stuff in R. This includes `{assertive}`,
       |                                                            ^
checkRd: (-1) pkg_sets.Rd:94: Lost braces; missing escapes or markup?
    94 | `{checkmate}`, `{covr}`, `{lintr}`, `{profvis}`, `{pryr}`,
       |  ^
checkRd: (-1) pkg_sets.Rd:94: Lost braces; missing escapes or markup?
    94 | `{checkmate}`, `{covr}`, `{lintr}`, `{profvis}`, `{pryr}`,
       |                 ^
checkRd: (-1) pkg_sets.Rd:94: Lost braces; missing escapes or markup?
    94 | `{checkmate}`, `{covr}`, `{lintr}`, `{profvis}`, `{pryr}`,
       |                           ^
checkRd: (-1) pkg_sets.Rd:94: Lost braces; missing escapes or markup?
    94 | `{checkmate}`, `{covr}`, `{lintr}`, `{profvis}`, `{pryr}`,
       |                                      ^
checkRd: (-1) pkg_sets.Rd:94: Lost braces; missing escapes or markup?
    94 | `{checkmate}`, `{covr}`, `{lintr}`, `{profvis}`, `{pryr}`,
       |                                                   ^
checkRd: (-1) pkg_sets.Rd:95: Lost braces; missing escapes or markup?
    95 | `{renv}`, `{roxygen2}`, `{styler}`, `{tarchetypes}`, `{testthat}`,
       |  ^
checkRd: (-1) pkg_sets.Rd:95: Lost braces; missing escapes or markup?
    95 | `{renv}`, `{roxygen2}`, `{styler}`, `{tarchetypes}`, `{testthat}`,
       |            ^
checkRd: (-1) pkg_sets.Rd:95: Lost braces; missing escapes or markup?
    95 | `{renv}`, `{roxygen2}`, `{styler}`, `{tarchetypes}`, `{testthat}`,
       |                          ^
checkRd: (-1) pkg_sets.Rd:95: Lost braces; missing escapes or markup?
    95 | `{renv}`, `{roxygen2}`, `{styler}`, `{tarchetypes}`, `{testthat}`,
       |                                      ^
checkRd: (-1) pkg_sets.Rd:95: Lost braces; missing escapes or markup?
    95 | `{renv}`, `{roxygen2}`, `{styler}`, `{tarchetypes}`, `{testthat}`,
       |                                                       ^
checkRd: (-1) pkg_sets.Rd:96: Lost braces; missing escapes or markup?
    96 | `{spelling}`, and `{usethis}`.
       |  ^
checkRd: (-1) pkg_sets.Rd:96: Lost braces; missing escapes or markup?
    96 | `{spelling}`, and `{usethis}`.
       |                    ^
checkRd: (-1) pkg_sets.Rd:99: Lost braces; missing escapes or markup?
    99 | `{blogdown}`, `{DT}`, `{pander}`, and `{pkgdown}`.
       |  ^
checkRd: (-1) pkg_sets.Rd:99: Lost braces; missing escapes or markup?
    99 | `{blogdown}`, `{DT}`, `{pander}`, and `{pkgdown}`.
       |                ^
checkRd: (-1) pkg_sets.Rd:99: Lost braces; missing escapes or markup?
    99 | `{blogdown}`, `{DT}`, `{pander}`, and `{pkgdown}`.
       |                        ^
checkRd: (-1) pkg_sets.Rd:99: Lost braces; missing escapes or markup?
    99 | `{blogdown}`, `{DT}`, `{pander}`, and `{pkgdown}`.
       |                                        ^
checkRd: (-1) pkg_sets.Rd:102: Lost braces; missing escapes or markup?
   102 | (`{shiny}` app included). This includes `{golem}`, `{docopt}`,
       |   ^
checkRd: (-1) pkg_sets.Rd:102: Lost braces; missing escapes or markup?
   102 | (`{shiny}` app included). This includes `{golem}`, `{docopt}`,
       |                                          ^
checkRd: (-1) pkg_sets.Rd:102: Lost braces; missing escapes or markup?
   102 | (`{shiny}` app included). This includes `{golem}`, `{docopt}`,
       |                                                     ^
checkRd: (-1) pkg_sets.Rd:103: Lost braces; missing escapes or markup?
   103 | `{plumbr}`, and `{shinyjs}`.
       |  ^
checkRd: (-1) pkg_sets.Rd:103: Lost braces; missing escapes or markup?
   103 | `{plumbr}`, and `{shinyjs}`.
       |                  ^
checkRd: (-1) tidy_summary.Rd:29: Lost braces; missing escapes or markup?
    29 | `{pander}`ed (e.g. printed on a word document after
       |  ^
checkRd: (-1) tidy_summary.Rd:30: Lost braces; missing escapes or markup?
    30 | \code{knit}ting the source (with `{knitr}`).
       |                                   ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [17s/21s] OK
  Running ‘spelling.R’
  Running ‘testthat.R’ [16s/20s]
* checking PDF version of manual ... [7s/10s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE