* installing *source* package ‘ddalpha’ ...
** package ‘ddalpha’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (GCC) 14.2.0’
using Fortran compiler: ‘GNU Fortran (GCC) 14.2.0’
using C++ compiler: ‘g++-14 (GCC) 14.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/ddalpha/src'
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c AlphaProcedure.cpp -o AlphaProcedure.o
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/traits.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/storage.hpp:27,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/vector.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/matrix.hpp:18,
from stdafx.h:21,
from AlphaProcedure.cpp:14:
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
111 | public std::iterator<IC, T> {
| ^~~~~~~~
In file included from /usr/local/gcc14/include/c++/14.2.0/bits/stl_algobase.h:65,
from /usr/local/gcc14/include/c++/14.2.0/algorithm:60,
from stdafx.h:15:
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
149 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c BandDepth.cpp -o BandDepth.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c Common.cpp -o Common.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c DKnn.cpp -o DKnn.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c HD.cpp -o HD.o
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/traits.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/storage.hpp:27,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/vector.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/matrix.hpp:18,
from stdafx.h:21,
from BandDepth.cpp:1:
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
111 | public std::iterator<IC, T> {
| ^~~~~~~~
In file included from /usr/local/gcc14/include/c++/14.2.0/bits/stl_algobase.h:65,
from /usr/local/gcc14/include/c++/14.2.0/algorithm:60,
from stdafx.h:15:
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
149 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/traits.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/storage.hpp:27,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/vector.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/matrix.hpp:18,
from stdafx.h:21,
from Common.cpp:10:
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
111 | public std::iterator<IC, T> {
| ^~~~~~~~
In file included from /usr/local/gcc14/include/c++/14.2.0/bits/stl_algobase.h:65,
from /usr/local/gcc14/include/c++/14.2.0/algorithm:60,
from stdafx.h:15:
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
149 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/traits.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/storage.hpp:27,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/vector.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/matrix.hpp:18,
from stdafx.h:21,
from DKnn.cpp:10:
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
111 | public std::iterator<IC, T> {
| ^~~~~~~~
In file included from /usr/local/gcc14/include/c++/14.2.0/bits/stl_algobase.h:65,
from /usr/local/gcc14/include/c++/14.2.0/algorithm:60,
from stdafx.h:15:
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
149 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/traits.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/storage.hpp:27,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/vector.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/matrix.hpp:18,
from stdafx.h:21,
from HD.cpp:12:
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
111 | public std::iterator<IC, T> {
| ^~~~~~~~
In file included from /usr/local/gcc14/include/c++/14.2.0/bits/stl_algobase.h:65,
from /usr/local/gcc14/include/c++/14.2.0/algorithm:60,
from stdafx.h:15:
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
149 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
Common.cpp: In function 'double determinant(bMatrix&)':
Common.cpp:164:27: warning: comparison of integer expressions of different signedness: 'int' and 'boost::numeric::ublas::vector<long unsigned int, boost::numeric::ublas::unbounded_array<long unsigned int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
164 | for (int i = 0; i < pivots.size(); ++i)
| ~~^~~~~~~~~~~~~~~
Common.cpp:166:31: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare]
166 | if (pivots(i) != i)
| ~~~~~~~~~~^~~~
Common.cpp: In function 'void outVector(TPoint&)':
Common.cpp:270:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
270 | for (int j = 0; j < point.size(); j++){
| ~~^~~~~~~~~~~~~~
Common.cpp: In function 'void outMatrix(TMatrix&)':
Common.cpp:280:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
280 | for (int i = 0; i < points.size(); i++){
| ~~^~~~~~~~~~~~~~~
Common.cpp:282:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
282 | for (int j = 0; j < points[i].size(); j++){
| ~~^~~~~~~~~~~~~~~~~~
Common.cpp: In function 'void outFeatures(Features)':
Common.cpp:294:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Feature>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
294 | for (int i = 0; i < fs.size(); i++){
| ~~^~~~~~~~~~~
In file included from /usr/include/string.h:535,
from /usr/local/gcc14/include/c++/14.2.0/cstring:43,
from /data/gannet/ripley/R/test-dev/BH/include/boost/core/bit.hpp:22,
from /data/gannet/ripley/R/test-dev/BH/include/boost/integer/integer_log2.hpp:24,
from /data/gannet/ripley/R/test-dev/BH/include/boost/random/detail/integer_log2.hpp:19,
from /data/gannet/ripley/R/test-dev/BH/include/boost/random/detail/large_arithmetic.hpp:19,
from /data/gannet/ripley/R/test-dev/BH/include/boost/random/detail/const_mod.hpp:23,
from /data/gannet/ripley/R/test-dev/BH/include/boost/random/linear_congruential.hpp:28,
from stdafx.h:24:
In function 'void* memcpy(void*, const void*, size_t)',
inlined from 'void BandDepth(T3DMatrix, T3DMatrix, int, int, int, int, bool, int, double*)' at BandDepth.cpp:43:15:
/usr/include/bits/string_fortified.h:29:33: warning: 'void* __builtin___memcpy_chk(void*, const void*, long unsigned int, long unsigned int)' specified bound 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=]
29 | return __builtin___memcpy_chk (__dest, __src, __len,
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
30 | __glibc_objsize0 (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c Knn.cpp -o Knn.o
DKnn.cpp: In function 'void knnGetClasses(TDMatrix, int*, int, int, int, TDMatrix, int, int, bool, int, int*)':
DKnn.cpp:76:28: warning: 'ptPrjDepths' may be used uninitialized [-Wmaybe-uninitialized]
76 | CountDepths(reflected, learnlabels, nlearn * 2, d, learnpoints, nlearn,
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
77 | depthType, depths, tempDepths,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | car, dirs, prjs, ptPrjDepths, ndir // halfspace
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | );
| ~
DKnn.cpp:64:18: note: 'ptPrjDepths' was declared here
64 | TDMatrix ptPrjDepths; if (depthType == 1) ptPrjDepths = newM(ndir, 1);
| ^~~~~~~~~~~
DKnn.cpp:76:28: warning: 'prjs' may be used uninitialized [-Wmaybe-uninitialized]
76 | CountDepths(reflected, learnlabels, nlearn * 2, d, learnpoints, nlearn,
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
77 | depthType, depths, tempDepths,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | car, dirs, prjs, ptPrjDepths, ndir // halfspace
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | );
| ~
DKnn.cpp:63:18: note: 'prjs' was declared here
63 | TDMatrix prjs; if (depthType == 1) prjs = newM(ndir, nlearn * 2);
| ^~~~
DKnn.cpp:76:28: warning: 'dirs' may be used uninitialized [-Wmaybe-uninitialized]
76 | CountDepths(reflected, learnlabels, nlearn * 2, d, learnpoints, nlearn,
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
77 | depthType, depths, tempDepths,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
78 | car, dirs, prjs, ptPrjDepths, ndir // halfspace
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
79 | );
| ~
DKnn.cpp:62:18: note: 'dirs' was declared here
62 | TDMatrix dirs; if (depthType == 1) dirs = newM(ndir, d);
| ^~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c LensDepth.cpp -o LensDepth.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c Mahalanobis.cpp -o Mahalanobis.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c OjaDepth.cpp -o OjaDepth.o
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/traits.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/storage.hpp:27,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/vector.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/matrix.hpp:18,
from stdafx.h:21,
from Knn.cpp:10:
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
111 | public std::iterator<IC, T> {
| ^~~~~~~~
In file included from /usr/local/gcc14/include/c++/14.2.0/bits/stl_algobase.h:65,
from /usr/local/gcc14/include/c++/14.2.0/algorithm:60,
from stdafx.h:15:
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
149 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/traits.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/storage.hpp:27,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/vector.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/matrix.hpp:18,
from stdafx.h:21,
from Mahalanobis.cpp:2:
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
111 | public std::iterator<IC, T> {
| ^~~~~~~~
In file included from /usr/local/gcc14/include/c++/14.2.0/bits/stl_algobase.h:65,
from /usr/local/gcc14/include/c++/14.2.0/algorithm:60,
from stdafx.h:15:
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
149 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/traits.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/storage.hpp:27,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/vector.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/matrix.hpp:18,
from stdafx.h:21,
from LensDepth.cpp:15:
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
111 | public std::iterator<IC, T> {
| ^~~~~~~~
In file included from /usr/local/gcc14/include/c++/14.2.0/bits/stl_algobase.h:65,
from /usr/local/gcc14/include/c++/14.2.0/algorithm:60,
from stdafx.h:15:
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
149 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c Polynomial.cpp -o Polynomial.o
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/traits.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/storage.hpp:27,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/vector.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/matrix.hpp:18,
from stdafx.h:21,
from OjaDepth.cpp:1:
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
111 | public std::iterator<IC, T> {
| ^~~~~~~~
In file included from /usr/local/gcc14/include/c++/14.2.0/bits/stl_algobase.h:65,
from /usr/local/gcc14/include/c++/14.2.0/algorithm:60,
from stdafx.h:15:
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
149 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c PotentialDepth.cpp -o PotentialDepth.o
Mahalanobis.cpp: In function 'void MahalanobisDepth(TDMatrix, TDMatrix, int, int, int, double, double*)':
Mahalanobis.cpp:32:13: warning: unused variable 'res' [-Wunused-variable]
32 | int res = lu_factorize(A, pm);
| ^~~
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/traits.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/storage.hpp:27,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/vector.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/matrix.hpp:18,
from stdafx.h:21,
from Polynomial.cpp:14:
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
111 | public std::iterator<IC, T> {
| ^~~~~~~~
In file included from /usr/local/gcc14/include/c++/14.2.0/bits/stl_algobase.h:65,
from /usr/local/gcc14/include/c++/14.2.0/algorithm:60,
from stdafx.h:15:
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
149 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/traits.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/storage.hpp:27,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/vector.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/matrix.hpp:18,
from stdafx.h:21,
from PotentialDepth.cpp:1:
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
111 | public std::iterator<IC, T> {
| ^~~~~~~~
In file included from /usr/local/gcc14/include/c++/14.2.0/bits/stl_algobase.h:65,
from /usr/local/gcc14/include/c++/14.2.0/algorithm:60,
from stdafx.h:15:
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
149 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c ProjectionDepth.cpp -o ProjectionDepth.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c SimplicialDepth.cpp -o SimplicialDepth.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c TukeyDepth.cpp -o TukeyDepth.o
PotentialDepth.cpp: In function 'double EuclidianDistance(TPoint&, TPoint&)':
PotentialDepth.cpp:5:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
5 | for (int i = 0; i < x.size(); i++){
| ~~^~~~~~~~~~
PotentialDepth.cpp: In function 'double EuclidianDistance2(TPoint&, TPoint&)':
PotentialDepth.cpp:13:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
13 | for (int i = 0; i< x.size(); i++){
| ~^~~~~~~~~~
PotentialDepth.cpp: In function 'void PotentialDepths(TMatrix&, TVariables&, TMatrix&, TMatrix&, double (*)(TPoint&, TPoint&, double), double, int)':
PotentialDepth.cpp:60:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
60 | for (int i = 0; i < cardinalities.size(); classBeginning += cardinalities[i], i++){
| ~~^~~~~~~~~~~~~~~~~~~~~~
PotentialDepth.cpp:67:60: warning: comparison of integer expressions of different signedness: 'std::vector<double>::size_type' {aka 'long unsigned int'} and '__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type' {aka 'int'} [-Wsign-compare]
67 | else if (classPointsDepths->size() < cardinalities[i])
PotentialDepth.cpp:76:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
76 | for (int p = 0; p < testpoints.size(); p++){
| ~~^~~~~~~~~~~~~~~~~~~
PotentialDepth.cpp:96:43: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<double> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
96 | for (int p = 0; p < testpoints.size(); p++){
| ~~^~~~~~~~~~~~~~~~~~~
PotentialDepth.cpp:65:25: warning: 'classPointsDepths' may be used uninitialized [-Wmaybe-uninitialized]
65 | if (!classPointsDepths)
| ^~
PotentialDepth.cpp:56:17: note: 'classPointsDepths' was declared here
56 | TPoint* classPointsDepths;
| ^~~~~~~~~~~~~~~~~
PotentialDepth.cpp:63:25: warning: 'classPoints' may be used uninitialized [-Wmaybe-uninitialized]
63 | if (classPoints) delete[] classPoints;
| ^~
PotentialDepth.cpp:55:18: note: 'classPoints' was declared here
55 | TMatrix* classPoints;
| ^~~~~~~~~~~
Polynomial.cpp: In function 'TPoint PolynomialLearnCV(TDMatrix, int, int, int, int, int*, int*)':
Polynomial.cpp:396:25: warning: unused variable 'tmp' [-Wunused-variable]
396 | for (int i = 0, tmp; i < numPoints; i++){ input2[i][0] = input[i][1]; input2[i][1] = input[i][0]; } // swap columns
| ^~~
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/traits.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/storage.hpp:27,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/vector.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/matrix.hpp:18,
from stdafx.h:21,
from SimplicialDepth.cpp:2:
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
111 | public std::iterator<IC, T> {
| ^~~~~~~~
In file included from /usr/local/gcc14/include/c++/14.2.0/bits/stl_algobase.h:65,
from /usr/local/gcc14/include/c++/14.2.0/algorithm:60,
from stdafx.h:15:
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
149 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/traits.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/storage.hpp:27,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/vector.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/matrix.hpp:18,
from stdafx.h:21,
from TukeyDepth.cpp:14:
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
111 | public std::iterator<IC, T> {
| ^~~~~~~~
In file included from /usr/local/gcc14/include/c++/14.2.0/bits/stl_algobase.h:65,
from /usr/local/gcc14/include/c++/14.2.0/algorithm:60,
from stdafx.h:15:
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
149 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/traits.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/storage.hpp:27,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/vector.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/matrix.hpp:18,
from stdafx.h:21,
from ProjectionDepth.cpp:14:
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
111 | public std::iterator<IC, T> {
| ^~~~~~~~
In file included from /usr/local/gcc14/include/c++/14.2.0/bits/stl_algobase.h:65,
from /usr/local/gcc14/include/c++/14.2.0/algorithm:60,
from stdafx.h:15:
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
149 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
SimplicialDepth.cpp: In function 'void SimplicialDepthsEx(TDMatrix, TDMatrix, int, int, int, double*)':
SimplicialDepth.cpp:46:22: warning: unused variable 'sc' [-Wunused-variable]
46 | bool sc = numSimplicesChecked == div0;
| ^~
SimplicialDepth.cpp: In function 'long long unsigned int intSD2(double**, int)':
SimplicialDepth.cpp:153:28: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
153 | for (int i = nh; i < nn; i++) {
| ~~^~~~
SimplicialDepth.cpp:154:27: warning: comparison of integer expressions of different signedness: 'long long unsigned int' and 'int' [-Wsign-compare]
154 | while ((j <= nh - 1) && (alpha[j] + M_PI <= alpha[i] - eps)) j++;
| ~~^~~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c ZonoidDepth.cpp -o ZonoidDepth.o
ProjectionDepth.cpp:21:12: warning: 'int CompareDec(OrderRec, OrderRec)' defined but not used [-Wunused-function]
21 | static int CompareDec(OrderRec x, OrderRec y)
| ^~~~~~~~~~
ProjectionDepth.cpp:16:12: warning: 'int CompareAsc(OrderRec, OrderRec)' defined but not used [-Wunused-function]
16 | static int CompareAsc(OrderRec x, OrderRec y)
| ^~~~~~~~~~
In file included from /usr/include/string.h:535,
from /usr/local/gcc14/include/c++/14.2.0/cstring:43,
from /data/gannet/ripley/R/test-dev/BH/include/boost/core/bit.hpp:22,
from /data/gannet/ripley/R/test-dev/BH/include/boost/integer/integer_log2.hpp:24,
from /data/gannet/ripley/R/test-dev/BH/include/boost/random/detail/integer_log2.hpp:19,
from /data/gannet/ripley/R/test-dev/BH/include/boost/random/detail/large_arithmetic.hpp:19,
from /data/gannet/ripley/R/test-dev/BH/include/boost/random/detail/const_mod.hpp:23,
from /data/gannet/ripley/R/test-dev/BH/include/boost/random/linear_congruential.hpp:28,
from stdafx.h:24:
In function 'void* memcpy(void*, const void*, size_t)',
inlined from 'void SimplicialDepthsEx(TDMatrix, TDMatrix, int, int, int, double*)' at SimplicialDepth.cpp:36:10:
/usr/include/bits/string_fortified.h:29:33: warning: 'void* __builtin___memcpy_chk(void*, const void*, long unsigned int, long unsigned int)' specified bound 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=]
29 | return __builtin___memcpy_chk (__dest, __src, __len,
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
30 | __glibc_objsize0 (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void* memcpy(void*, const void*, size_t)',
inlined from 'void SimplicialDepthsApx(TDMatrix, TDMatrix, int, int, int, long long unsigned int, double*)' at SimplicialDepth.cpp:98:9:
/usr/include/bits/string_fortified.h:29:33: warning: 'void* __builtin___memcpy_chk(void*, const void*, long unsigned int, long unsigned int)' specified bound 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=]
29 | return __builtin___memcpy_chk (__dest, __src, __len,
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
30 | __glibc_objsize0 (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c asa047.cpp -o asa047.o
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/traits.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/storage.hpp:27,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/vector.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/matrix.hpp:18,
from stdafx.h:21,
from ZonoidDepth.cpp:15:
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
111 | public std::iterator<IC, T> {
| ^~~~~~~~
In file included from /usr/local/gcc14/include/c++/14.2.0/bits/stl_algobase.h:65,
from /usr/local/gcc14/include/c++/14.2.0/algorithm:60,
from stdafx.h:15:
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
149 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
ZonoidDepth.cpp: In function 'double ZonoidDepth(std::vector<std::vector<double> >&, TPoint&, int&)':
ZonoidDepth.cpp:403:21: warning: comparison of integer expressions of different signedness: 'std::vector<SortRec>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
403 | if (x_sort.size() == n) { /* Allocation successful. */
| ~~~~~~~~~~~~~~^~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c ddalpha.cpp -o ddalpha.o
gfortran-14 -fpic -g -O2 -mtune=native -Wall -pedantic -c depth.fd.f -o depth.fd.o
depth.fd.f:119:28:
119 | integer I,J,K,OM(NR),L
| 1
Warning: Unused variable 'l' declared at (1) [-Wunused-variable]
depth.fd.f:119:26:
119 | integer I,J,K,OM(NR),L
| 1
Warning: Unused variable 'om' declared at (1) [-Wunused-variable]
depth.fd.f:1169:25:
1169 | INTEGER hF(N),I,J,K
| 1
Warning: Unused variable 'k' declared at (1) [-Wunused-variable]
depth.fd.f:1203:25:
1203 | INTEGER hF(N),I,J,K
| 1
Warning: Unused variable 'k' declared at (1) [-Wunused-variable]
depth.fd.f:241:24:
241 | INTEGER FUNCTION K(M,J)
| ^
Warning: '__result_k' may be used uninitialized [-Wmaybe-uninitialized]
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/traits.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/storage.hpp:27,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/vector.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/matrix.hpp:18,
from stdafx.h:21,
from ddalpha.cpp:14:
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
111 | public std::iterator<IC, T> {
| ^~~~~~~~
In file included from /usr/local/gcc14/include/c++/14.2.0/bits/stl_algobase.h:65,
from /usr/local/gcc14/include/c++/14.2.0/algorithm:60,
from stdafx.h:15:
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
149 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c stdafx.cpp -o stdafx.o
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/traits.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/storage.hpp:27,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/vector.hpp:21,
from /data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/matrix.hpp:18,
from stdafx.h:21,
from stdafx.cpp:5:
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:111:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
111 | public std::iterator<IC, T> {
| ^~~~~~~~
In file included from /usr/local/gcc14/include/c++/14.2.0/bits/stl_algobase.h:65,
from /usr/local/gcc14/include/c++/14.2.0/algorithm:60,
from stdafx.h:15:
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:149:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
149 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/numeric/ublas/detail/iterator.hpp:204:21: warning: 'template<class _Category, class _Tp, class _Distance, class _Pointer, class _Reference> struct std::iterator' is deprecated [-Wdeprecated-declarations]
204 | public std::iterator<IC, T> {
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here
127 | struct _GLIBCXX17_DEPRECATED iterator
| ^~~~~~~~
ddalpha.cpp: In function 'void AlphaLearn(double*, int*, int*, int*, int*, int*, double*)':
ddalpha.cpp:295:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
295 | for (int i = 0; i < direction.size(); i++){
| ~~^~~~~~~~~~~~~~~~~~
ddalpha.cpp: In function 'void AlphaLearnCV(double*, int*, int*, int*, int*, int*, int*, int*, double*)':
ddalpha.cpp:314:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
314 | for (int i = 0; i < direction.size(); i++){
| ~~^~~~~~~~~~~~~~~~~~
ddalpha.cpp: In function 'void AlphaClassify(double*, int*, int*, int*, double*, int*)':
ddalpha.cpp:330:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
330 | for (int i = 0; i < _x[0].size(); i++){
| ~~^~~~~~~~~~~~~~
g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o ddalpha.so AlphaProcedure.o BandDepth.o Common.o DKnn.o HD.o Knn.o LensDepth.o Mahalanobis.o OjaDepth.o Polynomial.o PotentialDepth.o ProjectionDepth.o SimplicialDepth.o TukeyDepth.o ZonoidDepth.o asa047.o ddalpha.o depth.fd.o init.o stdafx.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/ddalpha/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/ddalpha/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/ddalpha/src'
installing to /data/gannet/ripley/R/packages/tests-devel/ddalpha.Rcheck/00LOCK-ddalpha/00new/ddalpha/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ddalpha)