* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/cvasi.Rcheck’ * using R Under development (unstable) (2025-02-26 r87827) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) * running under: Fedora Linux 40 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘cvasi/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘cvasi’ version ‘1.3.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘cvasi’ can be installed ... [22s/62s] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/cvasi-00install.html' for details. * used C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [25s/97s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [28s/108s] ERROR Running examples in ‘cvasi-Ex.R’ failed The error most likely occurred in: > ### Name: plot_epx > ### Title: Plot EPx values > ### Aliases: plot_epx > > ### ** Examples > > ti <- 0:21 > expo <- abs(0.01*ti + rnorm(length(ti), 0, 0.05)) > exposure <- data.frame(time = ti, conc = expo) > metsulfuron_epx_mtw <- metsulfuron %>% + set_exposure(exposure) %>% + epx_mtw(level = 10, factor_cutoff = 1000) > metsulfuron_epx_mtw # A tibble: 30 × 5 window.start window.end endpoint level EPx <dbl> <dbl> <chr> <chr> <dbl> 1 0 7 BM 10 6.98 2 0 7 r 10 4.73 3 1 8 BM 10 6.03 4 1 8 r 10 3.99 5 2 9 BM 10 5.15 6 2 9 r 10 3.39 7 3 10 BM 10 4.73 8 3 10 r 10 3.07 9 4 11 BM 10 4.06 10 4 11 r 10 2.63 # ℹ 20 more rows > plot_epx(EPx_ts = metsulfuron_epx_mtw, + exposure_ts = exposure, conc_y_title = "env. concentration [µg/L]") Error in `dplyr::select()`: ℹ In argument: `dplyr::matches("window.end", "level")`. Caused by error in `grep()`: ! NA in coercion to Rboolean Backtrace: ▆ 1. ├─cvasi::plot_epx(...) 2. │ └─EPx_ts %>% ... 3. ├─dplyr::select(., !dplyr::matches("window.end", "level")) 4. ├─dplyr:::select.data.frame(., !dplyr::matches("window.end", "level")) 5. │ └─tidyselect::eval_select(expr(c(...)), data = .data, error_call = error_call) 6. │ └─tidyselect:::eval_select_impl(...) 7. │ ├─tidyselect:::with_subscript_errors(...) 8. │ │ └─base::withCallingHandlers(...) 9. │ └─tidyselect:::vars_select_eval(...) 10. │ └─tidyselect:::walk_data_tree(expr, data_mask, context_mask) 11. │ └─tidyselect:::eval_c(expr, data_mask, context_mask) 12. │ └─tidyselect:::reduce_sels(node, data_mask, context_mask, init = init) 13. │ └─tidyselect:::walk_data_tree(new, data_mask, context_mask) 14. │ └─tidyselect:::eval_bang(expr, data_mask, context_mask) 15. │ └─tidyselect:::walk_data_tree(expr[[2]], data_mask, context_mask) 16. │ └─tidyselect:::eval_context(expr, context_mask, call = error_call) 17. │ ├─tidyselect:::with_chained_errors(...) 18. │ │ └─base::withCallingHandlers(...) 19. │ └─rlang::eval_tidy(as_quosure(expr, env), context_mask) 20. ├─dplyr::matches("window.end", "level") 21. │ └─tidyselect:::flat_map_int(...) 22. │ └─tidyselect:::map(unname(.x), .fn, ...) 23. │ └─base::lapply(.x, .f, ...) 24. │ └─tidyselect (local) FUN(X[[i]], ...) 25. │ └─base::grep(needle, haystack, ...) 26. └─base::.handleSimpleError(...) 27. └─tidyselect (local) h(simpleError(msg, call)) 28. └─cli::cli_abort(c(i = msg), call = call, parent = cnd) 29. └─rlang::abort(...) Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [100s/233s] OK Running ‘testthat.R’ [99s/231s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [193s/265s] OK * checking PDF version of manual ... [13s/14s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR