- using R Under development (unstable) (2025-02-26 r87827)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
- running under: Fedora Linux 40 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘cvasi/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘cvasi’ version ‘1.3.1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘cvasi’ can be installed ... [22s/62s] OK
See the install log for details.
- used C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [25s/97s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [28s/108s] ERROR
Running examples in ‘cvasi-Ex.R’ failed
The error most likely occurred in:
> ### Name: plot_epx
> ### Title: Plot EPx values
> ### Aliases: plot_epx
>
> ### ** Examples
>
> ti <- 0:21
> expo <- abs(0.01*ti + rnorm(length(ti), 0, 0.05))
> exposure <- data.frame(time = ti, conc = expo)
> metsulfuron_epx_mtw <- metsulfuron %>%
+ set_exposure(exposure) %>%
+ epx_mtw(level = 10, factor_cutoff = 1000)
> metsulfuron_epx_mtw
# A tibble: 30 × 5
window.start window.end endpoint level EPx
<dbl> <dbl> <chr> <chr> <dbl>
1 0 7 BM 10 6.98
2 0 7 r 10 4.73
3 1 8 BM 10 6.03
4 1 8 r 10 3.99
5 2 9 BM 10 5.15
6 2 9 r 10 3.39
7 3 10 BM 10 4.73
8 3 10 r 10 3.07
9 4 11 BM 10 4.06
10 4 11 r 10 2.63
# ℹ 20 more rows
> plot_epx(EPx_ts = metsulfuron_epx_mtw,
+ exposure_ts = exposure, conc_y_title = "env. concentration [µg/L]")
Error in `dplyr::select()`:
ℹ In argument: `dplyr::matches("window.end", "level")`.
Caused by error in `grep()`:
! NA in coercion to Rboolean
Backtrace:
▆
1. ├─cvasi::plot_epx(...)
2. │ └─EPx_ts %>% ...
3. ├─dplyr::select(., !dplyr::matches("window.end", "level"))
4. ├─dplyr:::select.data.frame(., !dplyr::matches("window.end", "level"))
5. │ └─tidyselect::eval_select(expr(c(...)), data = .data, error_call = error_call)
6. │ └─tidyselect:::eval_select_impl(...)
7. │ ├─tidyselect:::with_subscript_errors(...)
8. │ │ └─base::withCallingHandlers(...)
9. │ └─tidyselect:::vars_select_eval(...)
10. │ └─tidyselect:::walk_data_tree(expr, data_mask, context_mask)
11. │ └─tidyselect:::eval_c(expr, data_mask, context_mask)
12. │ └─tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
13. │ └─tidyselect:::walk_data_tree(new, data_mask, context_mask)
14. │ └─tidyselect:::eval_bang(expr, data_mask, context_mask)
15. │ └─tidyselect:::walk_data_tree(expr[[2]], data_mask, context_mask)
16. │ └─tidyselect:::eval_context(expr, context_mask, call = error_call)
17. │ ├─tidyselect:::with_chained_errors(...)
18. │ │ └─base::withCallingHandlers(...)
19. │ └─rlang::eval_tidy(as_quosure(expr, env), context_mask)
20. ├─dplyr::matches("window.end", "level")
21. │ └─tidyselect:::flat_map_int(...)
22. │ └─tidyselect:::map(unname(.x), .fn, ...)
23. │ └─base::lapply(.x, .f, ...)
24. │ └─tidyselect (local) FUN(X[[i]], ...)
25. │ └─base::grep(needle, haystack, ...)
26. └─base::.handleSimpleError(...)
27. └─tidyselect (local) h(simpleError(msg, call))
28. └─cli::cli_abort(c(i = msg), call = call, parent = cnd)
29. └─rlang::abort(...)
Execution halted
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [100s/233s] OK
Running ‘testthat.R’ [99s/231s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [193s/265s] OK
- checking PDF version of manual ... [13s/14s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR