* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/cuda.ml.Rcheck’
* using R Under development (unstable) (2025-02-24 r87814)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘cuda.ml/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘cuda.ml’ version ‘0.3.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cuda.ml’ can be installed ... [163s/345s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/cuda.ml-00install.html' for details.
* used C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [3s/11s] OK
* checking whether the package can be loaded with stated dependencies ... [3s/11s] OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... [3s/12s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [21s/57s] OK
* checking Rd files ... NOTE
checkRd: (-1) cuML_major_version.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Get the major version of the RAPIDS cuML shared library {cuda.ml} was linked
       |                                                                ^
checkRd: (-1) cuML_major_version.Rd:16: Lost braces; missing escapes or markup?
    16 | Get the major version of the RAPIDS cuML shared library {cuda.ml} was linked
       |                                                         ^
checkRd: (-1) cuML_major_version.Rd:11: Lost braces; missing escapes or markup?
    11 | The major version of the RAPIDS cuML shared library {cuda.ml} was
       |                                                     ^
checkRd: (-1) cuML_major_version.Rd:12: Lost braces; missing escapes or markup?
    12 | linked to in a character vector, or \code{NA_character_} if {cuda.ml} was not
       |                                                             ^
checkRd: (-1) cuML_minor_version.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Get the minor version of the RAPIDS cuML shared library {cuda.ml} was linked
       |                                                                ^
checkRd: (-1) cuML_minor_version.Rd:16: Lost braces; missing escapes or markup?
    16 | Get the minor version of the RAPIDS cuML shared library {cuda.ml} was linked
       |                                                         ^
checkRd: (-1) cuML_minor_version.Rd:11: Lost braces; missing escapes or markup?
    11 | The minor version of the RAPIDS cuML shared library {cuda.ml} was
       |                                                     ^
checkRd: (-1) cuML_minor_version.Rd:12: Lost braces; missing escapes or markup?
    12 | linked to in a character vector, or \code{NA_character_} if {cuda.ml} was not
       |                                                             ^
checkRd: (-1) cuda_ml_agglomerative_clustering.Rd:22: Lost braces; missing escapes or markup?
    22 | {"euclidean", "l1", "l2", "manhattan", "cosine"}. If connectivity is
       | ^
checkRd: (-1) cuda_ml_agglomerative_clustering.Rd:26: Lost braces; missing escapes or markup?
    26 | of {"pairwise", "knn"}. Default: "pairwise".
       |    ^
checkRd: (-1) cuda_ml_dbscan.Rd:22: Lost braces; missing escapes or markup?
    22 | {"off", "critical", "error", "warn", "info", "debug", "trace"}.
       | ^
checkRd: (-1) cuda_ml_fil_enabled.Rd:6: Lost braces; missing escapes or markup?
     6 | in the current installation of {cuda.ml}.}
       |                                ^
checkRd: (-1) cuda_ml_fil_enabled.Rd:19: Lost braces; missing escapes or markup?
    19 | Treelite and then re-installing {cuda.ml}.
       |                                 ^
checkRd: (-1) cuda_ml_fil_load_model.Rd:23: Lost braces; missing escapes or markup?
    23 | {"classification", "regression"}.}
       | ^
checkRd: (-1) cuda_ml_fil_load_model.Rd:26: Lost braces; missing escapes or markup?
    26 | ends with ".json" and \code{model_type} is "xgboost", then {cuda.ml} will
       |                                                            ^
checkRd: (-1) cuda_ml_kmeans.Rd:35: Lost braces; missing escapes or markup?
    35 | {"off", "critical", "error", "warn", "info", "debug", "trace"}.
       | ^
checkRd: (-1) cuda_ml_knn.Rd:79: Lost braces; missing escapes or markup?
    79 |   {"brute", "ivfflat", "ivfpq", "ivfsq"} or a KNN algorithm specification
       |   ^
checkRd: (-1) cuda_ml_knn.Rd:101-104: Lost braces
   101 | \item{metric}{Distance metric to use. Must be one of {"euclidean", "l2",
       |                                                      ^
checkRd: (-1) cuda_ml_knn_algo_ivfsq.Rd:21-23: Lost braces
    21 | \item{qtype}{Quantizer type. Must be one of {"QT_8bit", "QT_4bit",
       |                                             ^
checkRd: (-1) cuda_ml_logistic_reg.Rd:95: Lost braces; missing escapes or markup?
    95 | {"none", "l1", "l2", "elasticnet"}.
       | ^
checkRd: (-1) cuda_ml_ols.Rd:66: Lost braces; missing escapes or markup?
    66 | \item{method}{Must be one of {"svd", "eig", "qr"}.
       |                              ^
checkRd: (-1) cuda_ml_pca.Rd:44: Lost braces; missing escapes or markup?
    44 | {"off", "critical", "error", "warn", "info", "debug", "trace"}.
       | ^
checkRd: (-1) cuda_ml_rand_forest.Rd:152: Lost braces; missing escapes or markup?
   152 | {"off", "critical", "error", "warn", "info", "debug", "trace"}.
       | ^
checkRd: (-1) cuda_ml_sgd.Rd:110: Lost braces; missing escapes or markup?
   110 | \item{loss}{Loss function, must be one of {"squared_loss", "log", "hinge"}.}
       |                                           ^
checkRd: (-1) cuda_ml_sgd.Rd:113: Lost braces; missing escapes or markup?
   113 |   {"none", "l1", "l2", "elasticnet"}.
       |   ^
checkRd: (-1) cuda_ml_sgd.Rd:146: Lost braces; missing escapes or markup?
   146 | \item{learning_rate}{Must be one of {"constant", "invscaling", "adaptive"}.
       |                                     ^
checkRd: (-1) cuda_ml_svm.Rd:157: Lost braces; missing escapes or markup?
   157 | {"off", "critical", "error", "warn", "info", "debug", "trace"}.
       | ^
checkRd: (-1) cuda_ml_tsne.Rd:39: Lost braces; missing escapes or markup?
    39 | \item{method}{T-SNE method, must be one of {"barnes_hut", "fft", "exact"}.
       |                                            ^
checkRd: (-1) cuda_ml_tsne.Rd:54: Lost braces; missing escapes or markup?
    54 | \item{learning_rate_method}{Must be one of {"adaptive", "none"}. If
       |                                            ^
checkRd: (-1) cuda_ml_tsne.Rd:97: Lost braces; missing escapes or markup?
    97 | {"off", "critical", "error", "warn", "info", "debug", "trace"}.
       | ^
checkRd: (-1) cuda_ml_tsvd.Rd:40: Lost braces; missing escapes or markup?
    40 | {"off", "critical", "error", "warn", "info", "debug", "trace"}.
       | ^
checkRd: (-1) cuda_ml_umap.Rd:51: Lost braces; missing escapes or markup?
    51 | one of {"spectral", "random"}. Default: "spectral".}
       |        ^
checkRd: (-1) cuda_ml_umap.Rd:91: Lost braces; missing escapes or markup?
    91 | Must be one of {"categorical", "euclidean"}. Default: "categorical".}
       |                ^
checkRd: (-1) cuda_ml_umap.Rd:109: Lost braces; missing escapes or markup?
   109 | {"off", "critical", "error", "warn", "info", "debug", "trace"}.
       | ^
checkRd: (-1) has_cuML.Rd:5: Lost braces; missing escapes or markup?
     5 | \title{Determine whether {cuda.ml} was linked to a valid version of the RAPIDS cuML
       |                          ^
checkRd: (-1) has_cuML.Rd:15: Lost braces; missing escapes or markup?
    15 | Determine whether {cuda.ml} was linked to a valid version of the RAPIDS cuML
       |                   ^
checkRd: (-1) has_cuML.Rd:11: Lost braces; missing escapes or markup?
    11 | A logical value indicating whether the current installation {cuda.ml}
       |                                                             ^
checkRd: (-1) predict.cuda_ml_rand_forest.Rd:30: Lost braces; missing escapes or markup?
    30 | {"off", "critical", "error", "warn", "info", "debug", "trace"}.
       | ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [7s/18s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... OK
  Running ‘testthat.R’
* checking PDF version of manual ... [9s/22s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE