* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/cosa.Rcheck’ * using R Under development (unstable) (2025-02-14 r87716) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) * running under: Fedora Linux 40 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘cosa/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘cosa’ version ‘2.1.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘cosa’ can be installed ... [25s/34s] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/cosa-00install.html' for details. * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [50s/62s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [10s/12s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [128s/165s] ERROR Error(s) in re-building vignettes: --- re-building ‘cosa_tutorial.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/cosa.Rcheck/vign_test/cosa/vignettes/cosa_tutorial_files/figure-html/unnamed-chunk-2-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 45045 bytes Input file size = 45183 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35157 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35157 Output IDAT size = 35157 bytes (9888 bytes decrease) Output file size = 35235 bytes (9948 bytes = 22.02% decrease) Quitting from lines 90-114 [unnamed-chunk-3] (cosa_tutorial.Rmd) Error: processing vignette 'cosa_tutorial.Rmd' failed with diagnostics: Solution is not feasible. Change default settings --- failed re-building ‘cosa_tutorial.Rmd’ SUMMARY: processing the following file failed: ‘cosa_tutorial.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [9s/11s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR