* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/correlation.Rcheck’
* using R Under development (unstable) (2025-02-15 r87726)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘correlation/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘correlation’ version ‘0.8.6’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘correlation’ can be installed ... [9s/21s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/correlation-00install.html' for details.
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [19s/48s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [10s/24s] ERROR
Running examples in ‘correlation-Ex.R’ failed
The error most likely occurred in:

> ### Name: cormatrix_to_excel
> ### Title: Easy export of correlation matrix to Excel
> ### Aliases: cormatrix_to_excel
> ### Keywords: Excel correlation matrix
> 
> ### ** Examples
> 
> ## Don't show: 
> if (requireNamespace("openxlsx2", quietly = TRUE)) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf
+ ## End(Don't show)
+ ## Don't show: 
+ .old_wd <- setwd(tempdir())
+ ## End(Don't show)
+ # Basic example
+ suppressWarnings(cormatrix_to_excel(mtcars,
+   select = c("mpg", "cyl", "disp", "hp", "carb"), filename = "cormatrix1"
+ ))
+ suppressWarnings(cormatrix_to_excel(iris,
+   p_adjust = "none",
+   filename = "cormatrix2"
+ ))
+ suppressWarnings(cormatrix_to_excel(airquality,
+   method = "spearman",
+   filename = "cormatrix3"
+ ))
+ ## Don't show: 
+ setwd(.old_wd)
+ ## End(Don't show)
+ ## Don't show: 
+ }) # examplesIf
> .old_wd <- setwd(tempdir())
> suppressWarnings(cormatrix_to_excel(mtcars, select = c("mpg", "cyl", "disp", 
+     "hp", "carb"), filename = "cormatrix1"))
# Correlation Matrix (pearson-method)

Parameter |      mpg |      cyl |     disp |       hp |    carb
---------------------------------------------------------------
mpg       |          | -0.85*** | -0.85*** | -0.78*** | -0.55**
cyl       | -0.85*** |          |  0.90*** |  0.83*** |  0.53**
disp      | -0.85*** |  0.90*** |          |  0.79*** |   0.39*
hp        | -0.78*** |  0.83*** |  0.79*** |          | 0.75***
carb      |  -0.55** |   0.53** |    0.39* |  0.75*** |        

p-value adjustment method: Holm (1979)
Error: x must be class wbColour
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [52s/123s] ERROR
  Running ‘testthat.R’ [51s/122s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(correlation)
  > 
  > test_check("correlation")
  
  For i = 2 j = 1  A cell entry of 0 was replaced with correct =  0.5.  Check your data!
  For i = 2 j = 1  A cell entry of 0 was replaced with correct =  0.5.  Check your data!
  [ FAIL 2 | WARN 125 | SKIP 11 | PASS 124 ]
  
  ══ Skipped tests (11) ══════════════════════════════════════════════════════════
  • On CRAN (11): 'test-as.list.R:7:3', 'test-correlation.R:172:3',
    'test-correlation.R:195:3', 'test-display_print_dataframe.R:2:3',
    'test-display_print_dataframe.R:14:3', 'test-display_print_matrix.R:4:3',
    'test-display_print_matrix.R:13:3', 'test-display_print_matrix.R:31:3',
    'test-methods.R:9:3', 'test-renaming.R:9:3',
    'test-selecting_variables.R:28:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-cormatrix_to_excel.R:3:3'): cormatrix_to_excel select ──────────
  Error: x must be class wbColour
  Backtrace:
      â–†
   1. └─testthat::expect_snapshot(...) at test-cormatrix_to_excel.R:3:3
   2.   └─rlang::cnd_signal(state$error)
  ── Error ('test-cormatrix_to_excel.R:16:3'): cormatrix_to_excel p_adjust ───────
  Error: x must be class wbColour
  Backtrace:
      â–†
   1. └─testthat::expect_snapshot(...) at test-cormatrix_to_excel.R:16:3
   2.   └─rlang::cnd_signal(state$error)
  
  [ FAIL 2 | WARN 125 | SKIP 11 | PASS 124 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [143s/430s] OK
* checking PDF version of manual ... [8s/23s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 ERRORs