• using R Under development (unstable) (2024-12-20 r87452)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (GCC) 14.2.0     GNU Fortran (GCC) 14.2.0
• running under: Fedora Linux 36 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘codyn/DESCRIPTION’ ... OK
• this is package ‘codyn’ version ‘2.0.5’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘codyn’ can be installed ... [12s/15s] OK See the install log for details.
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [21s/25s] OK
• checking Rd files ... NOTE checkRd: (-1) RAC_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_change.Rd:43-47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_change.Rd:48-51: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_change.Rd:52-56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_change.Rd:57-60: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_change.Rd:61-64: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_difference.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_difference.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_difference.Rd:54-57: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_difference.Rd:58-61: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_difference.Rd:62-65: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_difference.Rd:66-69: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_difference.Rd:70-74: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_difference.Rd:75-78: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_difference.Rd:79-84: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) RAC_difference.Rd:85-88: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) abundance_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) abundance_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) abundance_change.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) abundance_change.Rd:44-46: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) abundance_difference.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) abundance_difference.Rd:52-56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) abundance_difference.Rd:57-60: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) abundance_difference.Rd:61-64: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) abundance_difference.Rd:65-66: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) abundance_difference.Rd:67-70: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) abundance_difference.Rd:71-74: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) abundance_difference.Rd:75-76: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) codyn-package.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:23: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:24: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:25: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:29: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:33: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:34: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:35: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:36: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:37: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:38: Lost braces in \itemize; meant \describe ? checkRd: (-1) codyn-package.Rd:39: Lost braces in \itemize; meant \describe ? checkRd: (-1) community_diversity.Rd:29: Lost braces in \itemize; meant \describe ? checkRd: (-1) community_diversity.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) community_diversity.Rd:37-38: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) community_diversity.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) community_diversity.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) community_diversity.Rd:43-44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) community_stability.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) community_stability.Rd:26-27: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) community_structure.Rd:29-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) community_structure.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) community_structure.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) community_structure.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) community_structure.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) community_structure.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) community_structure.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) community_structure.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) community_structure.Rd:46-47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) confint.cyclic_shift.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) confint.cyclic_shift.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) confint.cyclic_shift.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) curve_change.Rd:39-40: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) curve_change.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) curve_change.Rd:43-44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) curve_difference.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) curve_difference.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) curve_difference.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) curve_difference.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) curve_difference.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) curve_difference.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) curve_difference.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mean_rank_shift.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mean_rank_shift.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) mean_rank_shift.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) multivariate_change.Rd:43-45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) multivariate_change.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) multivariate_change.Rd:49-54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) multivariate_change.Rd:55-56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) multivariate_difference.Rd:44-45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) multivariate_difference.Rd:46-47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) multivariate_difference.Rd:48-49: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) multivariate_difference.Rd:50-52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) multivariate_difference.Rd:53-54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) multivariate_difference.Rd:55-56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rank_shift.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rank_shift.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rank_shift.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rate_change.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rate_change.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rate_change_interval.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rate_change_interval.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) rate_change_interval.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) synchrony.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) synchrony.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) synchrony.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) synchrony.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) turnover.Rd:29: Lost braces in \itemize; meant \describe ? checkRd: (-1) turnover.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) turnover.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) turnover.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) turnover.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) turnover.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) variance_ratio.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) variance_ratio.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) variance_ratio.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) variance_ratio.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) variance_ratio.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [13s/14s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [91s/104s] OK   Running ‘testthat.R’ [91s/103s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [50s/65s] OK
• checking PDF version of manual ... [8s/13s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 NOTE