* installing *source* package ‘clarabel’ ...
** this is package ‘clarabel’ version ‘0.9.0.1’
** package ‘clarabel’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (GCC) 14.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/clarabel/src'
rm -Rf clarabel.so /data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust/target/release/libclarabel.a init.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o
# In some environments, ~/.cargo/bin might not be included in PATH, so we need
# to set it here to ensure cargo can be invoked. It is appended to PATH and
# therefore is only used if cargo is absent from the user's PATH.
export PATH=".:/data/gannet/ripley/bin:/usr/local/texbin:/usr/local/bin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lib64/openmpi/bin:/data/gannet/ripley/.cargo/bin" && \
echo "Rust version:" `rustc --version` && \
echo "Cargo version:" `cargo --version` && \
if [ "" != "wasm32-unknown-emscripten" ]; then \
if [ "yes" = "yes" ]; then \
mkdir -p /data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust/.cargo; \
cp ./rust/cargo_vendor_config.toml /data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust/.cargo/config.toml; \
/usr/bin/gtar --extract --xz -f ./rust/vendor.tar.xz -C ./rust ; \
export CARGO_HOME=/data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust/.cargo; \
export PATH=".:/data/gannet/ripley/bin:/usr/local/texbin:/usr/local/bin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lib64/openmpi/bin:/data/gannet/ripley/.cargo/bin"; \
cargo build -j 2 --lib --manifest-path=./rust/Cargo.toml --target-dir /data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust/target --release --offline; \
else \
cargo build -j 2 --lib --manifest-path=./rust/Cargo.toml --target-dir /data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust/target; \
fi \
else \
export CC="gcc-14" && \
export CFLAGS="-g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes " && \
export CARGO_PROFILE_DEV_PANIC="abort" && \
export CARGO_PROFILE_RELEASE_PANIC="abort" && \
cargo +nightly build -j 2 --lib --manifest-path=./rust/Cargo.toml --target-dir /data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust/target -Zbuild-std=panic_abort,std; \
fi
Rust version: rustc 1.84.0 (9fc6b4312 2025-01-07)
Cargo version: cargo 1.84.0 (66221abde 2024-11-19)
Locking 53 packages to latest compatible versions
Compiling proc-macro2 v1.0.85
Compiling unicode-ident v1.0.12
Compiling syn v1.0.109
Compiling autocfg v1.3.0
Compiling num-traits v0.2.19
Compiling quote v1.0.36
Compiling syn v2.0.66
Compiling libc v0.2.155
Compiling strsim v0.10.0
Compiling ident_case v1.0.1
Compiling fnv v1.0.7
Compiling darling_core v0.14.4
Compiling r-src v0.1.0
Compiling darling_macro v0.14.4
Compiling darling v0.14.4
Compiling serde v1.0.203
Compiling derive_builder_core v0.11.2
Compiling num-complex v0.4.6
Compiling serde_derive v1.0.203
Compiling serde_json v1.0.117
Compiling memchr v2.7.4
Compiling thiserror v1.0.61
Compiling cc v1.0.99
Compiling savvy v0.6.4
Compiling aho-corasick v1.1.3
Compiling derive_builder_macro v0.11.2
Compiling blas-sys v0.7.1
Compiling lapack-sys v0.14.0
Compiling thiserror-impl v1.0.61
Compiling savvy-bindgen v0.6.4
Compiling hashbrown v0.14.5
Compiling ryu v1.0.18
Compiling regex-syntax v0.8.4
Compiling itoa v1.0.11
Compiling either v1.12.0
Compiling once_cell v1.19.0
Compiling equivalent v1.0.1
Compiling indexmap v2.2.6
Compiling enum_dispatch v0.3.13
Compiling regex-automata v0.4.7
Compiling itertools v0.11.0
Compiling savvy-macro v0.6.4
Compiling lapack v0.19.0
Compiling blas v0.22.0
Compiling derive_builder v0.11.2
Compiling blas-src v0.10.0
Compiling lapack-src v0.10.0
Compiling amd v0.2.2
Compiling lazy_static v1.4.0
Compiling savvy-ffi v0.6.4
Compiling cfg-if v1.0.0
Compiling clarabel v0.9.0
Compiling regex v1.10.5
Compiling clarabel v0.9.0 (/data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust)
Finished `release` profile [optimized] target(s) in 2m 23s
rm -Rf /data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust/.cargo
rm -Rf ./rust/vendor
rm -Rf /data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust/target/release/build
gcc-14 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o clarabel.so init.o -L/data/gannet/ripley/R/packages/tests-devel/clarabel/src/rust/target/release -lclarabel -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/clarabel/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/clarabel/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/clarabel/src'
installing to /data/gannet/ripley/R/packages/tests-devel/clarabel.Rcheck/00LOCK-clarabel/00new/clarabel/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (clarabel)