* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/cellKey.Rcheck’ * using R Under development (unstable) (2025-02-14 r87716) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) * running under: Fedora Linux 40 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘cellKey/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘cellKey’ version ‘1.0.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘cellKey’ can be installed ... [91s/114s] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/cellKey-00install.html' for details. * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [27s/34s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [8s/10s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [8s/11s] ERROR Running examples in ‘cellKey-Ex.R’ failed The error most likely occurred in: > ### Name: ck_params_nums > ### Title: Set perturbation parameters for continuous variables > ### Aliases: ck_params_nums > > ### ** Examples > > # create a perturbation table using > # functionality from ptable-pkg; see help(pa = "ptable") > # this returns an extra ptable for very small cells > ptab <- ptable::pt_ex_nums(separation = TRUE) Error: nlopt_add_equality_mconstraint returned NLOPT_INVALID_ARGS. Error: The ptable can't be calculated without a violation of the constraints. The combination of the input parameters you set (e.g. D=5, V=1, js=0 or pstay) doesn't work. Please try another specification: either change the arguments 'mono=' or 'optim=' or try to use a different combination of input parameters (hint: changing the variance is sufficient in most cases). Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [7s/13s] OK Running ‘testthat.R’ [7s/12s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [17s/29s] OK * checking PDF version of manual ... [10s/15s] OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR