* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/broom.mixed.Rcheck’
* using R Under development (unstable) (2025-02-26 r87830)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘broom.mixed/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘broom.mixed’ version ‘0.2.9.6’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: ‘glmmADMB’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘broom.mixed’ can be installed ... [14s/48s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/broom.mixed-00install.html' for details.
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘glmm_tidiers.R’ ‘rstanarm_tidiers.Rd’
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [24s/59s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [32s/45s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [106s/138s] ERROR
  Running ‘test-all.R’ [106s/137s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > Sys.setenv("R_TESTS" = "")
  > library(testthat)
  > test_check("broom.mixed")
  Loading required package: broom.mixed
  GAMLSS-RS iteration 1: Global Deviance = 4771.925 
  GAMLSS-CG iteration 1: Global Deviance = 4771.013 
  GAMLSS-CG iteration 2: Global Deviance = 4770.994 
  GAMLSS-CG iteration 3: Global Deviance = 4770.994 
  [ FAIL 6 | WARN 1219 | SKIP 1 | PASS 282 ]
  
  ══ Skipped tests (1) ═══════════════════════════════════════════════════════════
  • On CRAN (1): 'test-rstanarm.R:36:5'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-lme4.R:199:5'): effects='ran_pars' + conf.int works ──────────
  as.data.frame(tt0) not equal to as.data.frame(tt).
  Component "conf.low": 'is.NA' value mismatch: 2 in current 0 in target
  Component "conf.high": 'is.NA' value mismatch: 2 in current 0 in target
  ── Failure ('test-lme4.R:213:5'): conf intervals for ranef in correct order ────
  cor_vals$conf.low > (-1) && cor_vals$conf.high < 1 is not TRUE
  
  `actual`:   <NA>
  `expected`: TRUE
  ── Failure ('test-lmertest.R:8:5'): testing lmerTest p-values ──────────────────
  td$df not equal to c(17, 17).
  2/2 mismatches (average diff: 49.9)
  [1]  18.1 - 17 ==  1.15
  [2] 115.7 - 17 == 98.69
  ── Failure ('test-lmertest.R:34:7'): Wald t intervals ──────────────────────────
  tmpf("Satterthwaite") not equal to c(231.320558648089, 271.015491535434).
  2/2 mismatches (average diff: 3.81)
  [1] 235 - 231 ==  4.01
  [2] 267 - 271 == -3.61
  ── Failure ('test-lmertest.R:35:7'): Wald t intervals ──────────────────────────
  tmpf("lme4") not equal to c(232.327411469392, 270.008638714131).
  2/2 mismatches (average diff: 3.17)
  [1] 236 - 232 ==  3.37
  [2] 267 - 270 == -2.97
  ── Failure ('test-lmertest.R:36:7'): Wald t intervals ──────────────────────────
  tmpf("Kenward-Roger") not equal to c(231.331769141079, 271.004281042444).
  2/2 mismatches (average diff: 3.5)
  [1] 235 - 231 ==  3.70
  [2] 268 - 271 == -3.31
  
  [ FAIL 6 | WARN 1219 | SKIP 1 | PASS 282 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [29s/31s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE