- using R Under development (unstable) (2025-02-26 r87830)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
- running under: Fedora Linux 40 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘broom.mixed/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘broom.mixed’ version ‘0.2.9.6’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... INFO
Package suggested but not available for checking: ‘glmmADMB’
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘broom.mixed’ can be installed ... [14s/48s] OK
See the install log for details.
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘glmm_tidiers.R’ ‘rstanarm_tidiers.Rd’
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking whether startup messages can be suppressed ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [24s/59s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [32s/45s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [106s/138s] ERROR
Running ‘test-all.R’ [106s/137s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> Sys.setenv("R_TESTS" = "")
> library(testthat)
> test_check("broom.mixed")
Loading required package: broom.mixed
GAMLSS-RS iteration 1: Global Deviance = 4771.925
GAMLSS-CG iteration 1: Global Deviance = 4771.013
GAMLSS-CG iteration 2: Global Deviance = 4770.994
GAMLSS-CG iteration 3: Global Deviance = 4770.994
[ FAIL 6 | WARN 1219 | SKIP 1 | PASS 282 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-rstanarm.R:36:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-lme4.R:199:5'): effects='ran_pars' + conf.int works ──────────
as.data.frame(tt0) not equal to as.data.frame(tt).
Component "conf.low": 'is.NA' value mismatch: 2 in current 0 in target
Component "conf.high": 'is.NA' value mismatch: 2 in current 0 in target
── Failure ('test-lme4.R:213:5'): conf intervals for ranef in correct order ────
cor_vals$conf.low > (-1) && cor_vals$conf.high < 1 is not TRUE
`actual`: <NA>
`expected`: TRUE
── Failure ('test-lmertest.R:8:5'): testing lmerTest p-values ──────────────────
td$df not equal to c(17, 17).
2/2 mismatches (average diff: 49.9)
[1] 18.1 - 17 == 1.15
[2] 115.7 - 17 == 98.69
── Failure ('test-lmertest.R:34:7'): Wald t intervals ──────────────────────────
tmpf("Satterthwaite") not equal to c(231.320558648089, 271.015491535434).
2/2 mismatches (average diff: 3.81)
[1] 235 - 231 == 4.01
[2] 267 - 271 == -3.61
── Failure ('test-lmertest.R:35:7'): Wald t intervals ──────────────────────────
tmpf("lme4") not equal to c(232.327411469392, 270.008638714131).
2/2 mismatches (average diff: 3.17)
[1] 236 - 232 == 3.37
[2] 267 - 270 == -2.97
── Failure ('test-lmertest.R:36:7'): Wald t intervals ──────────────────────────
tmpf("Kenward-Roger") not equal to c(231.331769141079, 271.004281042444).
2/2 mismatches (average diff: 3.5)
[1] 235 - 231 == 3.70
[2] 268 - 271 == -3.31
[ FAIL 6 | WARN 1219 | SKIP 1 | PASS 282 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [29s/31s] OK
- checking PDF version of manual ... OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR, 1 NOTE