* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/blme.Rcheck’ * using R Under development (unstable) (2025-02-14 r87716) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) * running under: Fedora Linux 40 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘blme/DESCRIPTION’ ... OK * this is package ‘blme’ version ‘1.0-6’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘blme’ can be installed ... [19s/22s] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/blme-00install.html' for details. * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [26s/32s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [38s/46s] ERROR Running ‘test-all.R’ [38s/45s] Running the tests in ‘tests/test-all.R’ failed. Complete output: > if (require(testthat, quietly = TRUE)) { + test_check("blme") + } else { + cat("package 'testthat' not available; cannot run unit tests\n") + } Loading required package: blme Loading required package: lme4 Loading required package: Matrix [ FAIL 2 | WARN 15 | SKIP 0 | PASS 109 ] â•â• Failed tests â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â• ── Failure ('test-06-lmm_resid.R:20:3'): blmer fits the eight schools example correctly ── eightSchools@theta not equal to 0. 1/1 mismatches [1] 1 - 0 == 1 ── Error ('test-07-lmm_fixef.R:120:3'): blmer fits sleep study example in documentation ── Error in `optwrap(optimizer, devfun, startingValues, lower = lowerBounds, control = control, adj = FALSE, verbose = verbose, ...)`: (converted from warning) convergence code -2 from nloptwrap: NLOPT_INVALID_ARGS: Invalid arguments (e.g. lower bounds are bigger than upper bounds, an unknown algorithm was specified, etcetera). Backtrace: â–† 1. └─blme::blmer(...) at test-07-lmm_fixef.R:120:3 2. └─blme:::optimizeLmer(...) 3. └─lme4:::optwrap(...) [ FAIL 2 | WARN 15 | SKIP 0 | PASS 109 ] Error: Test failures Execution halted * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR