* installing *source* package ‘blindrecalc’ ...
** package ‘blindrecalc’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (GCC) 14.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/blindrecalc/src'
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c chisquare_helper.cpp -o chisquare_helper.o
chisquare_helper.cpp: In function 'double chisq_recalc_reject(Rcpp::S4, double, double, Rcpp::String, Rcpp::NumericMatrix)':
chisquare_helper.cpp:141:50: warning: 'p1_e' may be used uninitialized [-Wmaybe-uninitialized]
  141 |                 pow(1 - p1_c, n_cdot - x_c) * pow(p1_e, x_e) *
      |                                               ~~~^~~~~~~~~~~
chisquare_helper.cpp:59:10: note: 'p1_e' was declared here
   59 |   double p1_e, p1_c, n2, p_c, p_e, p_hat, n_new, ts, x;
      |          ^~~~
chisquare_helper.cpp:140:62: warning: 'p1_c' may be used uninitialized [-Wmaybe-uninitialized]
  140 |                 Rf_choose(n_c2, k) * Rf_choose(n_e2, l) * pow(p1_c, x_c) *
      |                                                           ~~~^~~~~~~~~~~
chisquare_helper.cpp:59:16: note: 'p1_c' was declared here
   59 |   double p1_e, p1_c, n2, p_c, p_e, p_hat, n_new, ts, x;
      |                ^~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c farringtonmanning_helper.cpp -o farringtonmanning_helper.o
farringtonmanning_helper.cpp: In function 'double fm_fix_reject(Rcpp::S4, double, double, Rcpp::String)':
farringtonmanning_helper.cpp:78:39: warning: 'p1_e' may be used uninitialized [-Wmaybe-uninitialized]
   78 |           pow(1 - p1_c, n_c - i) * pow(p1_e, j) * pow(1 - p1_e, n_e - j);
      |                                    ~~~^~~~~~~~~
farringtonmanning_helper.cpp:40:10: note: 'p1_e' was declared here
   40 |   double p1_e, p1_c, p_c, p_e, pt_c, pt_e, se, ts, sum_prob;
      |          ^~~~
farringtonmanning_helper.cpp:77:64: warning: 'p1_c' may be used uninitialized [-Wmaybe-uninitialized]
   77 |         sum_prob = Rf_choose(n_c, i) * (Rf_choose(n_e, j) * pow(p1_c, i)) *
      |                                                             ~~~^~~~~~~~~
farringtonmanning_helper.cpp:40:16: note: 'p1_c' was declared here
   40 |   double p1_e, p1_c, p_c, p_e, pt_c, pt_e, se, ts, sum_prob;
      |                ^~~~
farringtonmanning_helper.cpp: In function 'double fm_recalc_reject(Rcpp::S4, double, double, Rcpp::String, Rcpp::NumericMatrix)':
farringtonmanning_helper.cpp:168:20: warning: 'p1_e' may be used uninitialized [-Wmaybe-uninitialized]
  168 |                 pow(p1_e, j + l) * pow(1 - p1_e, n_edot - j - l);
      |                 ~~~^~~~~~~~~~~~~
farringtonmanning_helper.cpp:93:10: note: 'p1_e' was declared here
   93 |   double p1_e, p1_c, p_c, p_e, pt_c, pt_e, se, ts, sum_prob;
      |          ^~~~
farringtonmanning_helper.cpp:167:20: warning: 'p1_c' may be used uninitialized [-Wmaybe-uninitialized]
  167 |                 pow(p1_c, i + k) * pow(1 - p1_c, n_cdot - i - k) *
      |                 ~~~^~~~~~~~~~~~~
farringtonmanning_helper.cpp:93:16: note: 'p1_c' was declared here
   93 |   double p1_e, p1_c, p_c, p_e, pt_c, pt_e, se, ts, sum_prob;
      |                ^~~~
g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o blindrecalc.so RcppExports.o chisquare_helper.o farringtonmanning_helper.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/blindrecalc/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/blindrecalc/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/blindrecalc/src'
installing to /data/gannet/ripley/R/packages/tests-devel/blindrecalc.Rcheck/00LOCK-blindrecalc/00new/blindrecalc/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (blindrecalc)