* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/blackbox.Rcheck’ * using R Under development (unstable) (2025-02-23 r87798) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) * running under: Fedora Linux 40 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘blackbox/DESCRIPTION’ ... OK * this is package ‘blackbox’ version ‘1.1.46’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘blackbox’ can be installed ... [105s/108s] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/blackbox-00install.html' for details. * used C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [60s/75s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... [23m/30m] ERROR Running examples in ‘blackbox-Ex.R’ failed The error most likely occurred in: > ### Name: bboptim > ### Title: Black-box function optimization > ### Aliases: bboptim rbb > ### Keywords: optimize > > ### ** Examples > > # Classical toy example with optional noise > fr <- function(v,sd) { ## Rosenbrock Banana function + 10 * (v["y"] - v["x"]^2)^2 + (1 - v["x"])^2 + rnorm(1,sd=sd) + } > set.seed(123) > > # Initial parameter values, including duplicates. See ?init_grid. > parsp <- init_grid(lower=c(x=0,y=0),upper=c(x=2,y=2),nUnique=25) > > #### Without noise > # add function values > simuls <- cbind(parsp,bb=apply(parsp,1,"fr",sd=0)) > > # optimization > bbresu <- bboptim(simuls) Only 25 unique coordinates selected for cross-validation. Warning in spaMM.options(spaMM_glm_conv_silent = TRUE) : 'spaMM_glm_conv_silent' not previously in spaMM.options. Check such name(s)? Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... OK Running ‘test-all.R’ * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR