* installing *source* package ‘bipartite’ ...
** this is package ‘bipartite’ version ‘2.21’
** package ‘bipartite’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
using C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/bipartite/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c bmn5.cc -o bmn5.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c identifyModules.cc -o identifyModules.o
gcc -std=gnu23 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c init.c -o init.o
bmn5.cc: In function ‘void matrixSize(std::string, int&, int&, int&)’:
bmn5.cc:511:16: warning: argument 1 null where non-null expected [-Wnonnull]
  511 |         b=fgetc(f);
      |           ~~~~~^~~
In file included from /usr/include/c++/14/cstdio:42,
                 from /data/gannet/ripley/R/R-devel/include/R.h:40,
                 from bmn5.cc:1:
/usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’
  575 | extern int fgetc (FILE *__stream) __nonnull ((1));
      |            ^~~~~
bmn5.cc:514:24: warning: argument 1 null where non-null expected [-Wnonnull]
  514 |                 b=fgetc(f);
      |                   ~~~~~^~~
/usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’
  575 | extern int fgetc (FILE *__stream) __nonnull ((1));
      |            ^~~~~
bmn5.cc:522:24: warning: argument 1 null where non-null expected [-Wnonnull]
  522 |                 b=fgetc(f);
      |                   ~~~~~^~~
/usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’
  575 | extern int fgetc (FILE *__stream) __nonnull ((1));
      |            ^~~~~
bmn5.cc:530:24: warning: argument 1 null where non-null expected [-Wnonnull]
  530 |                 b=fgetc(f);
      |                   ~~~~~^~~
/usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’
  575 | extern int fgetc (FILE *__stream) __nonnull ((1));
      |            ^~~~~
bmn5.cc:537:23: warning: argument 1 null where non-null expected [-Wnonnull]
  537 |                 fclose(f);
      |                 ~~~~~~^~~
/usr/include/stdio.h:184:12: note: in a call to function ‘int fclose(FILE*)’ declared ‘nonnull’
  184 | extern int fclose (FILE *__stream) __nonnull ((1));
      |            ^~~~~~
bmn5.cc:542:24: warning: argument 1 null where non-null expected [-Wnonnull]
  542 |                 b=fgetc(f);
      |                   ~~~~~^~~
/usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’
  575 | extern int fgetc (FILE *__stream) __nonnull ((1));
      |            ^~~~~
bmn5.cc:552:32: warning: argument 1 null where non-null expected [-Wnonnull]
  552 |                         b=fgetc(f);
      |                           ~~~~~^~~
/usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’
  575 | extern int fgetc (FILE *__stream) __nonnull ((1));
      |            ^~~~~
bmn5.cc:555:39: warning: argument 1 null where non-null expected [-Wnonnull]
  555 |                                 fclose(f);
      |                                 ~~~~~~^~~
/usr/include/stdio.h:184:12: note: in a call to function ‘int fclose(FILE*)’ declared ‘nonnull’
  184 | extern int fclose (FILE *__stream) __nonnull ((1));
      |            ^~~~~~
bmn5.cc:560:24: warning: argument 1 null where non-null expected [-Wnonnull]
  560 |                 b=fgetc(f);                             /*leo el primer char de la segunda fila*/
      |                   ~~~~~^~~
/usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’
  575 | extern int fgetc (FILE *__stream) __nonnull ((1));
      |            ^~~~~
bmn5.cc:564:31: warning: argument 1 null where non-null expected [-Wnonnull]
  564 |                         fclose(f);
      |                         ~~~~~~^~~
/usr/include/stdio.h:184:12: note: in a call to function ‘int fclose(FILE*)’ declared ‘nonnull’
  184 | extern int fclose (FILE *__stream) __nonnull ((1));
      |            ^~~~~~
bmn5.cc:571:32: warning: argument 1 null where non-null expected [-Wnonnull]
  571 |                         b=fgetc(f);
      |                           ~~~~~^~~
/usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’
  575 | extern int fgetc (FILE *__stream) __nonnull ((1));
      |            ^~~~~
bmn5.cc: In function ‘void readMatrix(std::string, int, int, int, int**)’:
bmn5.cc:595:16: warning: argument 1 null where non-null expected [-Wnonnull]
  595 |         b=fgetc(f);
      |           ~~~~~^~~
/usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’
  575 | extern int fgetc (FILE *__stream) __nonnull ((1));
      |            ^~~~~
bmn5.cc:598:24: warning: argument 1 null where non-null expected [-Wnonnull]
  598 |                 b=fgetc(f);
      |                   ~~~~~^~~
/usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’
  575 | extern int fgetc (FILE *__stream) __nonnull ((1));
      |            ^~~~~
bmn5.cc:604:24: warning: argument 1 null where non-null expected [-Wnonnull]
  604 |                 b=fgetc(f);
      |                   ~~~~~^~~
/usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’
  575 | extern int fgetc (FILE *__stream) __nonnull ((1));
      |            ^~~~~
bmn5.cc:612:32: warning: argument 1 null where non-null expected [-Wnonnull]
  612 |                         b=fgetc(f);
      |                           ~~~~~^~~
/usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’
  575 | extern int fgetc (FILE *__stream) __nonnull ((1));
      |            ^~~~~
bmn5.cc:619:32: warning: argument 1 null where non-null expected [-Wnonnull]
  619 |                         b=fgetc(f);
      |                           ~~~~~^~~
/usr/include/stdio.h:575:12: note: in a call to function ‘int fgetc(FILE*)’ declared ‘nonnull’
  575 | extern int fgetc (FILE *__stream) __nonnull ((1));
      |            ^~~~~
In file included from /usr/include/stdio.h:980:
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘void calcIdiosyncTemp(double**, int**, int*, int*, int, int)’ at bmn5.cc:1580:29,
    inlined from ‘void calcIdiosyncTemp(double**, int**, int*, int*, int, int)’ at bmn5.cc:1565:6:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:964:
/usr/include/bits/stdio2-decl.h: In function ‘void calcIdiosyncTemp(double**, int**, int*, int*, int, int)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1220:10:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1226:12:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1228:11:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1230:10:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
bmn5.cc:1232:23: warning: argument 1 null where non-null expected [-Wnonnull]
 1232 |                 fclose(out);
      |                 ~~~~~~^~~~~
/usr/include/stdio.h:184:12: note: in a call to function ‘int fclose(FILE*)’ declared ‘nonnull’
  184 | extern int fclose (FILE *__stream) __nonnull ((1));
      |            ^~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1274:21:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1275:21:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1278:42:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1280:43:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1283:41:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1285:22:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1286:23:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1289:43:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1291:44:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1294:42:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1296:22:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1317:20:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1318:20:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1321:42:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1323:43:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1326:41:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1328:22:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1329:23:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1332:43:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1334:44:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1337:42:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
In function ‘int fprintf(FILE*, const char*, ...)’,
    inlined from ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’ at bmn5.cc:1339:23:
/usr/include/bits/stdio2.h:79:24: warning: argument 1 null where non-null expected [-Wnonnull]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2-decl.h: In function ‘double packMatrix(int, int**, int**, double**, int*, int*, int, int, int, int, long int&)’:
/usr/include/bits/stdio2-decl.h:49:12: note: in a call to function ‘int __fprintf_chk(FILE*, int, const char*, ...)’ declared ‘nonnull’
   49 | extern int __fprintf_chk (FILE *__restrict __stream, int __flag,
      |            ^~~~~~~~~~~~~
bmn5.cc:1346:23: warning: argument 1 null where non-null expected [-Wnonnull]
 1346 | if (bmo==1)     fclose(out);
      |                 ~~~~~~^~~~~
/usr/include/stdio.h:184:12: note: in a call to function ‘int fclose(FILE*)’ declared ‘nonnull’
  184 | extern int fclose (FILE *__stream) __nonnull ((1));
      |            ^~~~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o bipartite.so bmn5.o identifyModules.o init.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/bipartite/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/bipartite/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/bipartite/src'
installing to /data/gannet/ripley/R/packages/tests-devel/bipartite.Rcheck/00LOCK-bipartite/00new/bipartite/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bipartite)