* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/bigGP.Rcheck’
* using R Under development (unstable) (2025-02-14 r87716)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘bigGP/DESCRIPTION’ ... OK
* this is package ‘bigGP’ version ‘0.1.8’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘bigGP’ can be installed ... [19s/34s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/bigGP-00install.html' for details.
* used C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
  possible bashism in configure.ac line 43 (test -a/-o):
  if test -n "${MPI_INCLUDE_PATH}" -a -z "${MPI_LIBPATH}" ; then
  possible bashism in configure.ac line 46 (test -a/-o):
  if test -z "${MPI_INCLUDE_PATH}" -a -n "${MPI_LIBPATH}" ; then
  possible bashism in configure.ac line 85 (test -a/-o):
    if test "$MPITYPE" = "UNKNOWN" -o "$MPITYPE" = "OPENMPI" ; then
  possible bashism in configure.ac line 86 (test -a/-o):
      if test "$SED" != "F" -a "$MPICC" != "F" -a "$OMPI_INFO" != "F" ; then
  possible bashism in configure.ac line 125 (test -a/-o):
        if test "${TMP_INC}" != "F" -a "${TMP_LIB}" != "F" ; then
  possible bashism in configure.ac line 143 (test -a/-o):
      if test "$SED" != "F" -a "$MPICC" != "F" -a "$MPICH2VERSION" != "F" ; then
  possible bashism in configure.ac line 183 (test -a/-o):
        if test "${TMP_INC}" != "F" -a "${TMP_LIB}" != "F" ; then
  possible bashism in configure.ac line 495 (test -a/-o):
  if test "$MPITYPE" = "OPENMPI" -o "$MPITYPE" = "LAM" -o "$MPITYPE" = "MPICH2" -o "$MPITYPE" = "FPMPI"; then
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s/19s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking PDF version of manual ... [9s/12s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE