* installing *source* package ‘bbknnR’ ...
** this is package ‘bbknnR’ version ‘1.1.1’
** package ‘bbknnR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (GCC) 14.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/bbknnR/src'
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c data_manipulation.cpp -o data_manipulation.o
data_manipulation.cpp: In function 'void trimming_cpp(Rcpp::NumericVector&, Rcpp::IntegerVector&, Rcpp::IntegerVector&, int)':
data_manipulation.cpp:101:28: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
  101 |   for (size_t col = 0; col < ncol; ++col) {
      |                        ~~~~^~~~~~
data_manipulation.cpp:103:31: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'Rcpp::traits::storage_type<13>::type' {aka 'int'} [-Wsign-compare]
  103 |     for (size_t i = p[col]; i < p[col + 1]; ++i) {
data_manipulation.cpp:104:20: warning: comparison of integer expressions of different signedness: 'std::priority_queue<double, std::vector<double>, std::greater<double> >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
  104 |       if (q.size() < trim) {
      |           ~~~~~~~~~^~~~~~
data_manipulation.cpp:120:28: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
  120 |   for (size_t col = 0; col < ncol; ++col) {
      |                        ~~~~^~~~~~
data_manipulation.cpp:122:31: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'Rcpp::traits::storage_type<13>::type' {aka 'int'} [-Wsign-compare]
  122 |     for (size_t i = p[col]; i < p[col + 1]; ++i) {
g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o bbknnR.so RcppExports.o data_manipulation.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/bbknnR/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/bbknnR/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/bbknnR/src'
installing to /data/gannet/ripley/R/packages/tests-devel/bbknnR.Rcheck/00LOCK-bbknnR/00new/bbknnR/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bbknnR)