* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/bayesPop.Rcheck’
* using R Under development (unstable) (2025-02-21 r87787)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘bayesPop/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘bayesPop’ version ‘11.0-2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘bayesPop’ can be installed ... [71s/181s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/bayesPop-00install.html' for details.
* used C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [16s/44s] OK
* checking whether the package can be loaded with stated dependencies ... [15s/36s] OK
* checking whether the package can be unloaded cleanly ... [16s/41s] OK
* checking whether the namespace can be loaded with stated dependencies ... [16s/38s] OK
* checking whether the namespace can be unloaded cleanly ... [17s/40s] OK
* checking loading without being on the library search path ... [18s/46s] OK
* checking whether startup messages can be suppressed ... [18s/44s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [125s/283s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [27s/65s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [41s/103s] ERROR
  Running ‘run_tests.R’ [23s/59s]
  Running ‘test_functions.R’ [18s/43s]
Running the tests in ‘tests/run_tests.R’ failed.
Complete output:
  > library(bayesPop)
  Loading required package: bayesTFR
  Loading required package: bayesLife
  Loading required package: MortCast
  Loading required package: wpp2017
  > source('test_functions.R')
  > 
  > CRAN <- TRUE
  > 
  > test.expressions()
  
  <=== Starting test of Population expressions  ====
  Loading required package: wpp2019
  [gannet:1198544:0:1198544] Caught signal 11 (Segmentation fault: address not mapped to object at address 0x1)
  ==== backtrace (tid:1198544) ====
   0  /lib64/libucs.so.0(ucs_handle_error+0x2e4) [0x7fb0caa90144]
   1  /lib64/libucs.so.0(+0x2880d) [0x7fb0caa9180d]
   2  /lib64/libucs.so.0(+0x289dd) [0x7fb0caa919dd]
   3  /lib64/libc.so.6(+0x40fd0) [0x7fb0e344efd0]
   4  /data/gannet/ripley/R/packages/tests-devel/bayesPop.Rcheck/bayesPop/libs/bayesPop.so(CCM+0x6fe) [0x7fb0caa11abe]
   5  /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ac448]
   6  /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4ea795]
   7  /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4e3dd6]
   8  /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x173) [0x4d3893]
   9  /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d771f]
  10  /data/gannet/ripley/R/R-devel/bin/exec/R() [0x4d33c1]
  11  /data/gannet/ripley/R/R-devel/bin/exec/R(Rf_eval+0x24b) [0x4d396b]
  12  /data/gannet/ripley/R/R-devel/bin/exec/R() [0x5238b0]
  13  /data/gannet/ripley/R/R-devel/bin/exec/R(run_Rmainloop+0x4b) [0x528aab]
  14  /data/gannet/ripley/R/R-devel/bin/exec/R() [0x528af4]
  15  /data/gannet/ripley/R/R-devel/bin/exec/R() [0x41884f]
  16  /lib64/libc.so.6(+0x2a088) [0x7fb0e3438088]
  17  /lib64/libc.so.6(__libc_start_main+0x8b) [0x7fb0e343814b]
  18  /data/gannet/ripley/R/R-devel/bin/exec/R(_start+0x25) [0x418875]
  =================================
  
   *** caught segfault ***
  address 0x4d2001249d0, cause 'unknown'
  
  Traceback:
   1: StoPopProj(npred, inpc, LTres, asfr, migpred, inpc$MIGtype, mig.rate.code = inp$mig.rate.code[2],     country.name = UNlocations[country.idx, "name"], keep.vital.events = keep.vital.events,     annual = inp$annual)
   2: predict.one.country(cidx, nr.traj, nr_project)
   3: do.pop.predict(country.codes, inp, outdir, nr.traj, ages, pred = if (prediction.exist) pred else NULL,     keep.vital.events = keep.vital.events, fixed.mx = inp$fixed.mx,     fixed.pasfr = fixed.pasfr, function.inputs = inputs, verbose = verbose,     ...)
   4: pop.predict(countries = c(528, 218, 450, 242, 458), nr.traj = 3,     verbose = FALSE, output.dir = sim.dir, parallel = parallel)
   5: test.expressions()
  An irrecoverable exception occurred. R is aborting now ...
* checking PDF version of manual ... [11s/29s] OK
* checking HTML version of manual ... [5s/12s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR