* installing *source* package ‘awdb’ ... ** this is package ‘awdb’ version ‘0.1.1’ ** package ‘awdb’ successfully unpacked and MD5 sums checked ** using staged installation Using cargo 1.84.1 (66221abde 2024-11-19) Using rustc 1.84.1 (e71f9a9a9 2025-01-27) (Fedora 1.84.1-1.fc40) ** libs using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/awdb/src' rm -Rf awdb.so ./rust/target/release/libawdb.a entrypoint.o gcc -std=gnu23 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c entrypoint.c -o entrypoint.o # Check if NOT_CRAN is false and unzip vendor.tar.xz if so if [ "" != "true" ]; then \ if [ -f ./rust/vendor.tar.xz ]; then \ tar xf rust/vendor.tar.xz && \ mkdir -p /data/gannet/ripley/R/packages/tests-devel/awdb/src/.cargo && \ cp rust/vendor-config.toml /data/gannet/ripley/R/packages/tests-devel/awdb/src/.cargo/config.toml; \ fi; \ fi export CARGO_HOME=/data/gannet/ripley/R/packages/tests-devel/awdb/src/.cargo && \ export PATH="/data/gannet/ripley/bin:/usr/local/bin:/usr/local/texbin:/usr/sbin:.:/data/gannet/ripley/bin:/usr/local/texbin:/usr/local/bin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lib64/openmpi/bin:/usr/lib64/openmpi/bin:/data/gannet/ripley/.cargo/bin" && \ RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter Compiling proc-macro2 v1.0.93 Compiling unicode-ident v1.0.16 Compiling quote v1.0.38 Compiling crossbeam-utils v0.8.21 Compiling syn v2.0.97 Compiling serde v1.0.217 Compiling libR-sys v0.7.1 Compiling crossbeam-epoch v0.9.18 Compiling serde_derive v1.0.217 Compiling rayon-core v1.12.1 Compiling paste v1.0.15 Compiling crossbeam-deque v0.8.6 Compiling serde_json v1.0.138 Compiling extendr-api v0.7.1 Compiling extendr-macros v0.7.1 Compiling memchr v2.7.4 Compiling ryu v1.0.19 Compiling once_cell v1.20.2 Compiling either v1.13.0 Compiling itoa v1.0.14 Compiling rayon v1.10.0 Compiling awdb v0.1.0 (/data/gannet/ripley/R/packages/tests-devel/awdb/src/rust) note: Link against the following native artifacts when linking against this static library. The order and any duplication can be significant on some platforms. note: native-static-libs: -lR -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc Finished `release` profile [optimized] target(s) in 7m 09s # Always clean up CARGOTMP rm -Rf /data/gannet/ripley/R/packages/tests-devel/awdb/src/.cargo; gcc -std=gnu23 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o awdb.so entrypoint.o -L./rust/target/release -lawdb make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/awdb/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/awdb/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/awdb/src' installing to /data/gannet/ripley/R/packages/tests-devel/awdb.Rcheck/00LOCK-awdb/00new/awdb/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (awdb)