* installing *source* package ‘arcpbf’ ...
** this is package ‘arcpbf’ version ‘0.1.6’
** package ‘arcpbf’ successfully unpacked and MD5 sums checked
** using staged installation
Using cargo 1.84.1 (66221abde 2024-11-19)
Using rustc 1.84.1 (e71f9a9a9 2025-01-27) (Fedora 1.84.1-1.fc40)
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/arcpbf/src'
rm -Rf arcpbf.so ./rust/target/release/libarcpbf.a entrypoint.o /data/gannet/ripley/R/packages/tests-devel/arcpbf/src/.cargo /data/gannet/ripley/R/packages/tests-devel/arcpbf/src/vendor
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c entrypoint.c -o entrypoint.o
if [ -f ./rust/vendor.tar.xz ]; then \
tar xf rust/vendor.tar.xz && \
mkdir -p /data/gannet/ripley/R/packages/tests-devel/arcpbf/src/.cargo && \
cp rust/vendor-config.toml /data/gannet/ripley/R/packages/tests-devel/arcpbf/src/.cargo/config.toml; \
fi
# In some environments, ~/.cargo/bin might not be included in PATH, so we need
# to set it here to ensure cargo can be invoked. It is appended to PATH and
# therefore is only used if cargo is absent from the user's PATH.
if [ "" != "true" ]; then \
export CARGO_HOME=/data/gannet/ripley/R/packages/tests-devel/arcpbf/src/.cargo; \
fi && \
export PATH=".:/data/gannet/ripley/bin:/usr/local/texbin:/usr/local/bin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lib64/openmpi/bin:/data/gannet/ripley/.cargo/bin" && \
cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target && \
echo `cargo --version` && echo `rustc --version`;
warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
package: /data/gannet/ripley/R/packages/tests-devel/arcpbf/src/rust/arcpbf/Cargo.toml
workspace: /data/gannet/ripley/R/packages/tests-devel/arcpbf/src/rust/Cargo.toml
warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter
Compiling proc-macro2 v1.0.86
Compiling unicode-ident v1.0.12
Compiling quote v1.0.37
Compiling syn v2.0.77
Compiling anyhow v1.0.86
Compiling autocfg v1.3.0
Compiling either v1.13.0
Compiling libR-sys v0.7.1
Compiling itertools v0.12.1
Compiling num-traits v0.2.19
Compiling paste v1.0.15
Compiling prost-derive v0.12.6
Compiling bytes v1.7.1
Compiling extendr-api v0.7.1
Compiling prost v0.12.6
Compiling extendr-macros v0.7.1
Compiling once_cell v1.19.0
Compiling iana-time-zone v0.1.60
Compiling chrono v0.4.38
Compiling esripbf v0.1.0 (/data/gannet/ripley/R/packages/tests-devel/arcpbf/src/rust/esripbf)
Compiling arcpbf v0.1.0 (/data/gannet/ripley/R/packages/tests-devel/arcpbf/src/rust/arcpbf)
Finished `release` profile [optimized] target(s) in 2m 00s
cargo 1.84.1 (66221abde 2024-11-19)
rustc 1.84.1 (e71f9a9a9 2025-01-27) (Fedora 1.84.1-1.fc40)
rm -Rf /data/gannet/ripley/R/packages/tests-devel/arcpbf/src/.cargo /data/gannet/ripley/R/packages/tests-devel/arcpbf/src/vendor ./rust/target/release/build; \
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o arcpbf.so entrypoint.o -L./rust/target/release -larcpbf
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/arcpbf/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/arcpbf/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/arcpbf/src'
installing to /data/gannet/ripley/R/packages/tests-devel/arcpbf.Rcheck/00LOCK-arcpbf/00new/arcpbf/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (arcpbf)