• using R Under development (unstable) (2024-11-15 r87338)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (GCC) 14.2.0     GNU Fortran (GCC) 14.2.0
• running under: Fedora Linux 36 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘airGR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘airGR’ version ‘1.7.6’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘airGR’ can be installed ... [19s/23s] OK See the install log for details.
• used C compiler: ‘gcc-14 (GCC) 14.2.0’
• used Fortran compiler: ‘GNU Fortran (GCC) 14.2.0’
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [33s/40s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking usage of KIND in Fortran files ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [37s/42s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [12s/14s] OK   Running ‘testthat.R’ [11s/14s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [74s/99s] ERROR Error(s) in re-building vignettes: --- re-building ‘V01_get_started.Rmd’ using rmarkdown --- finished re-building ‘V01_get_started.Rmd’ --- re-building ‘V02.1_param_optim.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/airGR.Rcheck/vign_test/airGR/vignettes/V02.1_param_optim_files/figure-html/unnamed-chunk-5-1.png 576x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8701 bytes Input file size = 9571 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7436   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7436 Output IDAT size = 7436 bytes (1265 bytes decrease) Output file size = 7514 bytes (2057 bytes = 21.49% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/airGR.Rcheck/vign_test/airGR/vignettes/V02.1_param_optim_files/figure-html/unnamed-chunk-6-1.png 576x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 24294 bytes Input file size = 25176 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22663   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22663 Output IDAT size = 22663 bytes (1631 bytes decrease) Output file size = 22741 bytes (2435 bytes = 9.67% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/airGR.Rcheck/vign_test/airGR/vignettes/V02.1_param_optim_files/figure-html/unnamed-chunk-7-1.png 1152x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 114904 bytes Input file size = 115150 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 109341   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 109341 Output IDAT size = 109341 bytes (5563 bytes decrease) Output file size = 109419 bytes (5731 bytes = 4.98% decrease) --- finished re-building ‘V02.1_param_optim.Rmd’ --- re-building ‘V02.2_param_mcmc.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/airGR.Rcheck/vign_test/airGR/vignettes/V02.2_param_mcmc_files/figure-html/unnamed-chunk-10-1.png 576x864 pixels, 3x8 bits/pixel, RGB Input IDAT size = 101427 bytes Input file size = 101649 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 92229   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 92229 Output IDAT size = 92229 bytes (9198 bytes decrease) Output file size = 92307 bytes (9342 bytes = 9.19% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/airGR.Rcheck/vign_test/airGR/vignettes/V02.2_param_mcmc_files/figure-html/unnamed-chunk-11-1.png 576x864 pixels, 3x8 bits/pixel, RGB Input IDAT size = 83743 bytes Input file size = 83941 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 72045   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 72045 Output IDAT size = 72045 bytes (11698 bytes decrease) Output file size = 72123 bytes (11818 bytes = 14.08% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/airGR.Rcheck/vign_test/airGR/vignettes/V02.2_param_mcmc_files/figure-html/unnamed-chunk-12-1.png 576x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 106344 bytes Input file size = 106566 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 80552   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 80552 Output IDAT size = 80552 bytes (25792 bytes decrease) Output file size = 80630 bytes (25936 bytes = 24.34% decrease) --- finished re-building ‘V02.2_param_mcmc.Rmd’ --- re-building ‘V03_param_sets_GR4J.Rmd’ using rmarkdown --- finished re-building ‘V03_param_sets_GR4J.Rmd’ --- re-building ‘V04_cemaneige_hysteresis.Rmd’ using rmarkdown --- finished re-building ‘V04_cemaneige_hysteresis.Rmd’ --- re-building ‘V05_sd_model.Rmd’ using rmarkdown Quitting from lines 216-221 [unnamed-chunk-16] (V05_sd_model.Rmd) Error: processing vignette 'V05_sd_model.Rmd' failed with diagnostics: cannot get data pointer of 'NULL' objects --- failed re-building ‘V05_sd_model.Rmd’ SUMMARY: processing the following file failed:   ‘V05_sd_model.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [13s/19s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR