* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/adoptr.Rcheck’
* using R Under development (unstable) (2025-02-14 r87716)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘adoptr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘adoptr’ version ‘1.1.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘adoptr’ can be installed ... [13s/16s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/adoptr-00install.html' for details.
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [14s/17s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [52s/71s] ERROR
Running ‘testthat.R’ [52s/70s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(adoptr)
Attaching package: 'adoptr'
The following object is masked from 'package:testthat':
expectation
>
> test_check("adoptr")
Error: nlopt_add_inequality_mconstraint returned NLOPT_INVALID_ARGS.
Error: nlopt_add_inequality_mconstraint returned NLOPT_INVALID_ARGS.
Error: nlopt_add_inequality_mconstraint returned NLOPT_INVALID_ARGS.
Error: nlopt_add_inequality_mconstraint returned NLOPT_INVALID_ARGS.
Error: nlopt_add_inequality_mconstraint returned NLOPT_INVALID_ARGS.
Error: nlopt_add_inequality_mconstraint returned NLOPT_INVALID_ARGS.
Error: nlopt_add_inequality_mconstraint returned NLOPT_INVALID_ARGS.
Error: nlopt_add_inequality_mconstraint returned NLOPT_INVALID_ARGS.
Error: nlopt_add_inequality_mconstraint returned NLOPT_INVALID_ARGS.
Error: nlopt_add_inequality_mconstraint returned NLOPT_INVALID_ARGS.
Error: nlopt_add_inequality_mconstraint returned NLOPT_INVALID_ARGS.
Error: nlopt_add_inequality_mconstraint returned NLOPT_INVALID_ARGS.
Error: nlopt_add_inequality_mconstraint returned NLOPT_INVALID_ARGS.
Error: nlopt_add_inequality_mconstraint returned NLOPT_INVALID_ARGS.
Error: nlopt_add_inequality_mconstraint returned NLOPT_INVALID_ARGS.
Error: nlopt_add_inequality_mconstraint returned NLOPT_INVALID_ARGS.
Error: nlopt_add_inequality_mconstraint returned NLOPT_INVALID_ARGS.
Error: nlopt_add_inequality_mconstraint returned NLOPT_INVALID_ARGS.
[ FAIL 10 | WARN 6 | SKIP 0 | PASS 384 ]
â•â• Failed tests â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•
── Failure ('test_OneStageDesign.R:64:5'): Optimal one-stage design with point prior is computable ──
round(evaluate(pow, d2), 1) not equal to 0.8.
1/1 mismatches
[1] 0.9 - 0.8 == 0.1
── Failure ('test_OneStageDesign.R:69:5'): Optimal one-stage design with point prior is computable ──
round(evaluate(toer, d2), 2) not equal to 0.05.
1/1 mismatches
[1] 0.02 - 0.05 == -0.03
── Failure ('test_OneStageDesign.R:74:5'): Optimal one-stage design with point prior is computable ──
sign(evaluate(ess, d2) - 40) == -1 is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test_StudentDistribution.R:128:3'): Published results are reproducible ──
ceiling(osd1@n1) not equal to 18/2.
1/1 mismatches
[1] 20 - 9 == 11
── Failure ('test_StudentDistribution.R:133:3'): Published results are reproducible ──
ceiling(osd2@n1) not equal to 34/2.
1/1 mismatches
[1] 20 - 17 == 3
── Failure ('test_StudentDistribution.R:138:3'): Published results are reproducible ──
ceiling(osd3@n1) not equal to 128/2.
1/1 mismatches
[1] 20 - 64 == -44
── Failure ('test_minimize.R:59:5'): nloptr maxiter warning correctly passed ───
`minimize(...)` did not produce any warnings.
── Failure ('test_minimize.R:228:5'): base-case results are consistent - no post processing ──
evaluate(ess, opt_ts$design) is not strictly less than evaluate(ess, opt_gs$design). Difference: 0.229
── Failure ('test_minimize.R:249:5'): base-case results are consistent - no post processing ──
mean(sim_null$n2 + sim_null$n1) not equal to evaluate(ess_0, opt_ts$design).
1/1 mismatches
[1] 38.3 - 38.2 == 0.029
── Failure ('test_minimize.R:305:5'): conditional constraints work ─────────────
evaluate(cp, opt_ts$design, opt_ts$design@c1f) is not more than 0.75 - tol. Difference: -0.109
[ FAIL 10 | WARN 6 | SKIP 0 | PASS 384 ]
Error: Test failures
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [65s/83s] OK
* checking PDF version of manual ... [10s/12s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR