* installing *source* package ‘adespatial’ ...
** package ‘adespatial’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (GCC) 14.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/adespatial/src'
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c WRperiodogram.c -o WRperiodogram.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c adesub.c -o adesub.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c betadiv.c -o betadiv.o
betadiv.c: In function 'euclidean':
betadiv.c:36:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
36 | for (i = 0; i < I; i++)
| ^~~
In file included from betadiv.c:7:
/data/gannet/ripley/R/R-devel/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
389 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:42:9: note: in expansion of macro 'UNPROTECT'
42 | UNPROTECT(3);
| ^~~~~~~~~
betadiv.c: In function 'manhattan':
betadiv.c:476:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
476 | for (i=0; i<I; i++)
| ^~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
389 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:483:9: note: in expansion of macro 'UNPROTECT'
483 | UNPROTECT(3);
| ^~~~~~~~~
betadiv.c: In function 'canberra':
betadiv.c:506:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
506 | for (i=0; i<I; i++)
| ^~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
389 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:530:9: note: in expansion of macro 'UNPROTECT'
530 | UNPROTECT(4);
| ^~~~~~~~~
betadiv.c: In function 'kulczynski':
betadiv.c:549:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
549 | for (i=0; i<I; i++)
| ^~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
389 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:563:9: note: in expansion of macro 'UNPROTECT'
563 | UNPROTECT(3);
| ^~~~~~~~~
betadiv.c: In function 'divergence':
betadiv.c:586:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
586 | for (i=0; i<I; i++)
| ^~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
389 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:608:9: note: in expansion of macro 'UNPROTECT'
608 | UNPROTECT(4);
| ^~~~~~~~~
betadiv.c: In function 'modmean':
betadiv.c:630:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
630 | for (i=0; i<I; i++)
| ^~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
389 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:646:9: note: in expansion of macro 'UNPROTECT'
646 | UNPROTECT(4);
| ^~~~~~~~~
betadiv.c: In function 'whittaker':
betadiv.c:701:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
701 | for (i=0; i<I; i++)
| ^~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
389 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:718:9: note: in expansion of macro 'UNPROTECT'
718 | UNPROTECT(3);
| ^~~~~~~~~
betadiv.c: In function 'wishart':
betadiv.c:737:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
737 | for (i=0; i<I; i++)
| ^~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
389 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:752:9: note: in expansion of macro 'UNPROTECT'
752 | UNPROTECT(3);
| ^~~~~~~~~
betadiv.c: In function 'percentdiff':
betadiv.c:982:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
982 | for (i = 0; i < I; i++)
| ^~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
389 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:1000:9: note: in expansion of macro 'UNPROTECT'
1000 | UNPROTECT(6);
| ^~~~~~~~~
betadiv.c: In function 'binary_D':
betadiv.c:1020:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
1020 | for (i=0; i<I; i++)
| ^~~
/data/gannet/ripley/R/R-devel/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
389 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:1035:9: note: in expansion of macro 'UNPROTECT'
1035 | UNPROTECT(4);
| ^~~~~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c buildbinary.c -o buildbinary.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c constr.hclust.c -o constr.hclust.o
constr.hclust.c: In function 'initNNlist':
constr.hclust.c:109:15: warning: 'nn' may be used uninitialized [-Wmaybe-uninitialized]
109 | nn_idx[i] = nn;
| ~~~~~~~~~~^~~~
constr.hclust.c:99:25: note: 'nn' was declared here
99 | unsigned int i, j, k, nn;
| ^~
constr.hclust.c: In function 'updateNNlist':
constr.hclust.c:130:13: warning: 'nn' may be used uninitialized [-Wmaybe-uninitialized]
130 | nn_idx[i] = nn;
| ~~~~~~~~~~^~~~
constr.hclust.c:121:22: note: 'nn' was declared here
121 | unsigned int j, k, nn;
| ^~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c forward.c -o forward.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c stipermute.c -o stipermute.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c testsmoran.c -o testsmoran.o
gcc-14 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o adespatial.so WRperiodogram.o adesub.o betadiv.o buildbinary.o constr.hclust.o forward.o init.o stipermute.o testsmoran.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/adespatial/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/adespatial/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/adespatial/src'
installing to /data/gannet/ripley/R/packages/tests-devel/adespatial.Rcheck/00LOCK-adespatial/00new/adespatial/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (adespatial)