* installing *source* package ‘WpProj’ ...
** this is package ‘WpProj’ version ‘0.2.3’
** package ‘WpProj’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (GCC) 14.2.0’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/WpProj/src'
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/approxOT/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppCGAL/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RSpectra/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/approxOT/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppCGAL/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RSpectra/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c SufficientStatistics.cpp -o SufficientStatistics.o
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/cstdfloat.hpp:27,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/float128_functions.hpp:15,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/fpclassify.hpp:13,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/default_ops.hpp:15,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/generic_interconvert.hpp:12,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/number.hpp:12,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/cpp_int.hpp:19,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Quotient.h:37,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Kernel_d/Tuple_d.h:21,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Kernel_d/PointCd.h:21,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Cartesian_d.h:27,
from /data/gannet/ripley/R/test-dev/approxOT/include/approxOT/hilbert_cgal.h:5,
from /data/gannet/ripley/R/test-dev/approxOT/include/approxOT/trans_hilbert.h:5,
from /data/gannet/ripley/R/test-dev/approxOT/include/approxOT/transport.h:8,
from SufficientStatistics.h:8,
from SufficientStatistics.cpp:1:
/data/gannet/ripley/R/test-dev/BH/include/boost/math/cstdfloat/cstdfloat_cmath.hpp:714:16: warning: non-standard suffix on floating constant [-Wpedantic]
714 | else if (x == BOOST_FLOAT128_C(0.0))
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/math/cstdfloat/cstdfloat_cmath.hpp:717:16: warning: non-standard suffix on floating constant [-Wpedantic]
717 | if (::BOOST_CSTDFLOAT_FLOAT128_FABS(x) < BOOST_CSTDFLOAT_FLOAT128_MIN)
| ^~
In file included from /data/gannet/ripley/R/test-dev/approxOT/include/approxOT/networkflow.h:10,
from /data/gannet/ripley/R/test-dev/approxOT/include/approxOT/transport.h:9:
/data/gannet/ripley/R/test-dev/approxOT/include/approxOT/network_simplex_simple.h:486: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
486 | #pragma omp parallel
/data/gannet/ripley/R/test-dev/approxOT/include/approxOT/network_simplex_simple.h:494: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
494 | #pragma omp for schedule(static, bs) lastprivate(e)
/data/gannet/ripley/R/test-dev/approxOT/include/approxOT/network_simplex_simple.h:896: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
896 | #pragma omp parallel for schedule(static)
/data/gannet/ripley/R/test-dev/approxOT/include/approxOT/network_simplex_simple.h:1450: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
1450 | #pragma omp parallel for
/data/gannet/ripley/R/test-dev/approxOT/include/approxOT/network_simplex_simple.h:1470: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
1470 | #pragma omp parallel for
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/approxOT/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppCGAL/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RSpectra/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c W2penalized.cpp -o W2penalized.o
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/cstdfloat.hpp:27,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/float128_functions.hpp:15,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/fpclassify.hpp:13,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/default_ops.hpp:15,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/generic_interconvert.hpp:12,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/number.hpp:12,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/cpp_int.hpp:19,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Quotient.h:37,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Kernel_d/Tuple_d.h:21,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Kernel_d/PointCd.h:21,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Cartesian_d.h:27,
from /data/gannet/ripley/R/test-dev/approxOT/include/approxOT/hilbert_cgal.h:5,
from /data/gannet/ripley/R/test-dev/approxOT/include/approxOT/trans_hilbert.h:5,
from /data/gannet/ripley/R/test-dev/approxOT/include/approxOT/transport.h:8,
from SufficientStatistics.h:8,
from W2penalized.cpp:3:
/data/gannet/ripley/R/test-dev/BH/include/boost/math/cstdfloat/cstdfloat_cmath.hpp:714:16: warning: non-standard suffix on floating constant [-Wpedantic]
714 | else if (x == BOOST_FLOAT128_C(0.0))
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/math/cstdfloat/cstdfloat_cmath.hpp:717:16: warning: non-standard suffix on floating constant [-Wpedantic]
717 | if (::BOOST_CSTDFLOAT_FLOAT128_FABS(x) < BOOST_CSTDFLOAT_FLOAT128_MIN)
| ^~
In file included from /data/gannet/ripley/R/test-dev/approxOT/include/approxOT/networkflow.h:10,
from /data/gannet/ripley/R/test-dev/approxOT/include/approxOT/transport.h:9:
/data/gannet/ripley/R/test-dev/approxOT/include/approxOT/network_simplex_simple.h:486: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
486 | #pragma omp parallel
/data/gannet/ripley/R/test-dev/approxOT/include/approxOT/network_simplex_simple.h:494: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
494 | #pragma omp for schedule(static, bs) lastprivate(e)
/data/gannet/ripley/R/test-dev/approxOT/include/approxOT/network_simplex_simple.h:896: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
896 | #pragma omp parallel for schedule(static)
/data/gannet/ripley/R/test-dev/approxOT/include/approxOT/network_simplex_simple.h:1450: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
1450 | #pragma omp parallel for
/data/gannet/ripley/R/test-dev/approxOT/include/approxOT/network_simplex_simple.h:1470: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
1470 | #pragma omp parallel for
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /data/gannet/ripley/R/test-dev/BH/include/boost/property_map/vector_property_map.hpp:14,
from /data/gannet/ripley/R/test-dev/BH/include/boost/property_map/property_map.hpp:598,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/property_map.h:18,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Spatial_sort_traits_adapter_d.h:18,
from /data/gannet/ripley/R/test-dev/approxOT/include/approxOT/hilbert_cgal.h:7:
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/detail/shared_count.hpp:326:33: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
326 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/local/gcc14/include/c++/14.2.0/bits/std_thread.h:43,
from /usr/local/gcc14/include/c++/14.2.0/thread:45,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/config.h:420,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/basic.h:21,
from /data/gannet/ripley/R/test-dev/approxOT/include/approxOT/hilbert_cgal.h:4:
/usr/local/gcc14/include/c++/14.2.0/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:354:31: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
354 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:365:22: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
365 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:423:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
423 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:430:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
430 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)':
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:432:38: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
432 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
SufficientStatistics.cpp: In function 'void suff_stat_scale_ot(const refMatConst&, refMat, const refMatConst&, bool, int, int, int, matrix&, matrix&, const std::string&, double, int)':
SufficientStatistics.cpp:140:7: warning: unused variable 'count' [-Wunused-variable]
140 | int count = 0;
| ^~~~~
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /data/gannet/ripley/R/test-dev/BH/include/boost/property_map/vector_property_map.hpp:14,
from /data/gannet/ripley/R/test-dev/BH/include/boost/property_map/property_map.hpp:598,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/property_map.h:18,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Spatial_sort_traits_adapter_d.h:18,
from /data/gannet/ripley/R/test-dev/approxOT/include/approxOT/hilbert_cgal.h:7:
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/detail/shared_count.hpp:326:33: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
326 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/local/gcc14/include/c++/14.2.0/bits/std_thread.h:43,
from /usr/local/gcc14/include/c++/14.2.0/thread:45,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/config.h:420,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/basic.h:21,
from /data/gannet/ripley/R/test-dev/approxOT/include/approxOT/hilbert_cgal.h:4:
/usr/local/gcc14/include/c++/14.2.0/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:354:31: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
354 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:365:22: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
365 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:423:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
423 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:430:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
430 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)':
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:432:38: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
432 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/approxOT/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppCGAL/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RSpectra/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c oem_xtx.cpp -o oem_xtx.o
W2penalized.cpp: In function 'SEXPREC* W2penalized(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
W2penalized.cpp:94:14: warning: unused variable 'same' [-Wunused-variable]
94 | const bool same = !(not_same);
| ^~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/approxOT/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppCGAL/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RSpectra/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c progress_cleanup.cpp -o progress_cleanup.o
oem_xtx.cpp: In member function 'virtual double oemXTX_gen::compute_lambda_zero(std::string)':
oem_xtx.cpp:318:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
318 | for ( int i = 0; i < gr_idx.size(); i++ ) {
| ~~^~~~~~~~~~~~~~~
oem_xtx.cpp:335:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
335 | for ( int i = 0; i < gr_idx.size(); i++ ) {
| ~~^~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/approxOT/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppCGAL/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RSpectra/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c selectionVarMeanGeneration.cpp -o selectionVarMeanGeneration.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/approxOT/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppCGAL/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RSpectra/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c utils.cpp -o utils.o
/data/gannet/ripley/R/test-dev/approxOT/include/approxOT/network_simplex_simple.h: In member function 'bool lemon::NetworkSimplexSimple<GR, V, C, ArcsType>::BlockSearchPivotRule::findEnteringArc() [with GR = lemon::FullBipartiteDigraph; V = double; C = double; ArcsType = long long int]':
/data/gannet/ripley/R/test-dev/approxOT/include/approxOT/network_simplex_simple.h:513:13: warning: 'e' may be used uninitialized [-Wmaybe-uninitialized]
513 | _next_arc = e;
| ~~~~~~~~~~^~~
/data/gannet/ripley/R/test-dev/approxOT/include/approxOT/network_simplex_simple.h:484:18: note: 'e' was declared here
484 | ArcsType e;
| ^
In file included from /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/Core:337,
from /data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/Dense:1,
from /data/gannet/ripley/R/test-dev/RcppEigen/include/RcppEigenForward.h:28,
from /data/gannet/ripley/R/test-dev/RcppEigen/include/RcppEigen.h:25,
from oem_base.h:4,
from oem_xtx.h:5,
from oem_xtx.cpp:1:
/data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h: In function 'static void Eigen::internal::selfadjoint_product_impl<Lhs, LhsMode, false, Rhs, 0, true>::run(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >; Lhs = const Eigen::Ref<const Eigen::Matrix<double, -1, -1> >; int LhsMode = 17; Rhs = Eigen::Map<const Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >]':
/data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:229:7: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized]
227 | internal::selfadjoint_matrix_vector_product<Scalar, Index, (internal::traits<ActualLhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
228 | int(LhsUpLo), bool(LhsBlasTraits::NeedToConjugate), bool(RhsBlasTraits::NeedToConjugate)>::run
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
229 | (
| ^
230 | lhs.rows(), // size
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
231 | &lhs.coeffRef(0,0), lhs.outerStride(), // lhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
232 | actualRhsPtr, // rhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
233 | actualDestPtr, // result info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
234 | actualAlpha // scale factor
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
235 | );
| ~
/data/gannet/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:41:6: note: by argument 4 of type 'const double*' to 'static void Eigen::internal::selfadjoint_matrix_vector_product<Scalar, Index, StorageOrder, UpLo, ConjugateLhs, ConjugateRhs, Version>::run(Index, const Scalar*, Index, const Scalar*, Scalar*, Scalar) [with Scalar = double; Index = long int; int StorageOrder = 0; int UpLo = 1; bool ConjugateLhs = false; bool ConjugateRhs = false; int Version = 0]' declared here
41 | void selfadjoint_matrix_vector_product<Scalar,Index,StorageOrder,UpLo,ConjugateLhs,ConjugateRhs,Version>::run(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o WpProj.so RcppExports.o SufficientStatistics.o W2penalized.o oem_xtx.o progress_cleanup.o selectionVarMeanGeneration.o utils.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/WpProj/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/WpProj/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/WpProj/src'
installing to /data/gannet/ripley/R/packages/tests-devel/WpProj.Rcheck/00LOCK-WpProj/00new/WpProj/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (WpProj)