* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/TIMP.Rcheck’
* using R Under development (unstable) (2025-02-14 r87716)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘TIMP/DESCRIPTION’ ... OK
* this is package ‘TIMP’ version ‘1.13.6’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TIMP’ can be installed ... [31s/42s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/TIMP-00install.html' for details.
* used C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [52s/65s] OK
* checking Rd files ... NOTE
checkRd: (-1) dat-class.Rd:47: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dat-class.Rd:48: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dat-class.Rd:49: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dat-class.Rd:50: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dat-class.Rd:51: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dat-class.Rd:133-134: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dat-class.Rd:135-136: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dat-class.Rd:137: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dat-class.Rd:138: Lost braces in \itemize; meant \describe ?
checkRd: (-1) dat-class.Rd:139-141: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit-class.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit-class.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:23-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:40-45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:46-53: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:54-68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:69-79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:75: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:76-77: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:80-90: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:84: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:86: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:87-88: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:91-99: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:95: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:96: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:97-98: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:100-120: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:104-105: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:106-107: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:108-109: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:110-112: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:113: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:114-115: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:116-117: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:118-119: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:121-124: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fitModel.Rd:139-141: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitModel.Rd:142-144: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitModel.Rd:145-147: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) fitModel.Rd:148-149: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) kinopt-class.Rd:22-29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kinopt-class.Rd:30-33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) kinopt-class.Rd:34-36: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [42s/51s] OK
  Running ‘example2nd.R’
  Running ‘kin_sim_large_script.R’
  Running ‘kin_simple_ir_script.R’
  Running ‘kin_simple_visible_script.R’ [14s/18s]
  Running ‘kin_target_script.R’
  Running ‘spectral_script.R’ [8s/10s]
* checking PDF version of manual ... [13s/18s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE