* installing *source* package ‘SOMMD’ ...
** this is package ‘SOMMD’ version ‘0.1.2’
** package ‘SOMMD’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/SOMMD/src'
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c rio_xtc.c -o rio_xtc.o
rio_xtc.c: In function ‘file_exists’:
rio_xtc.c:14:5: warning: argument 1 null where non-null expected [-Wnonnull]
   14 |     fclose(file);
      |     ^~~~~~~~~~~~
In file included from /data/gannet/ripley/R/R-devel/include/R.h:44,
                 from rio_xtc.c:1:
/usr/include/stdio.h:184:12: note: in a call to function ‘fclose’ declared ‘nonnull’
  184 | extern int fclose (FILE *__stream) __nonnull ((1));
      |            ^~~~~~
rio_xtc.c: In function ‘rio_write_xtc_’:
rio_xtc.c:252:29: warning: ‘status’ may be used uninitialized [-Wmaybe-uninitialized]
  252 |   INTEGER(return_status)[0] = status;
      |   ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
rio_xtc.c:209:7: note: ‘status’ was declared here
  209 |   int status;
      |       ^~~~~~
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c init.c -o init.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c xdrfile/xdrfile.c -o xdrfile/xdrfile.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c xdrfile/xdrfile_trr.c -o xdrfile/xdrfile_trr.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c xdrfile/xdrfile_xtc.c -o xdrfile/xdrfile_xtc.o
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o SOMMD.so rio_xtc.o init.o xdrfile/xdrfile.o xdrfile/xdrfile_trr.o xdrfile/xdrfile_xtc.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/SOMMD/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/SOMMD/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/SOMMD/src'
installing to /data/gannet/ripley/R/packages/tests-devel/SOMMD.Rcheck/00LOCK-SOMMD/00new/SOMMD/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SOMMD)