* installing *source* package ‘Rankcluster’ ...
** this is package ‘Rankcluster’ version ‘0.98.0’
** package ‘Rankcluster’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
using C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Rankcluster/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ISRfunctions.cpp -o ISRfunctions.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RankCluster.cpp -o RankCluster.o
RankCluster.cpp: In member function ‘void RankCluster::run()’:
RankCluster.cpp:1323:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1323 |       for (int j = 0; j < d_; j++)
      |       ^~~
RankCluster.cpp:1333:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1333 |         convergence_ = true;
      |         ^~~~~~~~~~~~
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c Rankcluster_init.c -o Rankcluster_init.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RinterfaceFunctions.cpp -o RinterfaceFunctions.o
RinterfaceFunctions.cpp: In function ‘SEXPREC* loglikelihood(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
RinterfaceFunctions.cpp:109:9: warning: unused variable ‘nb’ [-Wunused-variable]
  109 |     int nb = as<int>(nb_cpus);
      |         ^~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RinterfaceSEM.cpp -o RinterfaceSEM.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RinterfaceTest.cpp -o RinterfaceTest.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c functions.cpp -o functions.o
functions.cpp: In function ‘std::vector<int> rank2index(const std::vector<std::vector<int> >&, const std::vector<int>&)’:
functions.cpp:101:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  101 |   for (size_t i = 0; i < n; i++)
      |                      ~~^~~
functions.cpp: In function ‘int distanceKendall(const Rank&, const Rank&)’:
functions.cpp:235:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  235 |     for (int j(i + 1); j < m; j++)
      |     ^~~
functions.cpp:239:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  239 |       return distK;
      |       ^~~~~~
functions.cpp: In function ‘int sampleMultinomial(const Eigen::ArrayXd&)’:
functions.cpp:455:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  455 |   for (int j = 0; j < g; j++)
      |   ^~~
functions.cpp:459:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  459 |     return g - 1;
      |     ^~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c test.cpp -o test.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o Rankcluster.so ISRfunctions.o RankCluster.o Rankcluster_init.o RinterfaceFunctions.o RinterfaceSEM.o RinterfaceTest.o functions.o test.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Rankcluster/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Rankcluster/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Rankcluster/src'
installing to /data/gannet/ripley/R/packages/tests-devel/Rankcluster.Rcheck/00LOCK-Rankcluster/00new/Rankcluster/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rankcluster)