* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck’
* using R Under development (unstable) (2025-02-15 r87726)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘RSDA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RSDA’ version ‘3.2.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RSDA’ can be installed ... [40s/100s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/RSDA-00install.html' for details.
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [8s/20s] OK
* checking whether the package can be loaded with stated dependencies ... [6s/17s] OK
* checking whether the package can be unloaded cleanly ... [6s/15s] OK
* checking whether the namespace can be loaded with stated dependencies ... [6s/15s] OK
* checking whether the namespace can be unloaded cleanly ... [8s/19s] OK
* checking loading without being on the library search path ... [7s/17s] OK
* checking whether startup messages can be suppressed ... [7s/19s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [68s/189s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [28s/74s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [9s/25s] OK
Running ‘testthat.R’ [9s/24s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [34m/62m] ERROR
Error(s) in re-building vignettes:
--- re-building ‘introduction.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-28-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 36617 bytes
Input file size = 36743 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26166
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26166
Output IDAT size = 26166 bytes (10451 bytes decrease)
Output file size = 26244 bytes (10499 bytes = 28.57% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-28-2.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 38887 bytes
Input file size = 39013 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27823
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27823
Output IDAT size = 27823 bytes (11064 bytes decrease)
Output file size = 27901 bytes (11112 bytes = 28.48% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-28-3.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8914 bytes
Input file size = 9004 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8136
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 7598
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 7598
Output IDAT size = 7598 bytes (1316 bytes decrease)
Output file size = 7676 bytes (1328 bytes = 14.75% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-28-4.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11328 bytes
Input file size = 11418 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9791
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9777
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9777
Output IDAT size = 9777 bytes (1551 bytes decrease)
Output file size = 9855 bytes (1563 bytes = 13.69% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-29-1.png
576x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7076 bytes
Input file size = 7934 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6165
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6165
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6165
Output IDAT size = 6165 bytes (911 bytes decrease)
Output file size = 6243 bytes (1691 bytes = 21.31% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-30-1.png
576x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7750 bytes
Input file size = 8608 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6714
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6699
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6699
Output IDAT size = 6699 bytes (1051 bytes decrease)
Output file size = 6777 bytes (1831 bytes = 21.27% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-31-1.png
576x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7391 bytes
Input file size = 8249 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6110
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6110
Output IDAT size = 6110 bytes (1281 bytes decrease)
Output file size = 6188 bytes (2061 bytes = 24.98% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-38-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 29950 bytes
Input file size = 30064 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21578
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21578
Output IDAT size = 21578 bytes (8372 bytes decrease)
Output file size = 21656 bytes (8408 bytes = 27.97% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-38-2.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31562 bytes
Input file size = 31676 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24683
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24683
Output IDAT size = 24683 bytes (6879 bytes decrease)
Output file size = 24761 bytes (6915 bytes = 21.83% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-42-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 30733 bytes
Input file size = 30847 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22314
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22314
Output IDAT size = 22314 bytes (8419 bytes decrease)
Output file size = 22392 bytes (8455 bytes = 27.41% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-42-2.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 32103 bytes
Input file size = 32217 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25854
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25854
Output IDAT size = 25854 bytes (6249 bytes decrease)
Output file size = 25932 bytes (6285 bytes = 19.51% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-43-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10407 bytes
Input file size = 10497 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8610
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8610
Output IDAT size = 8610 bytes (1797 bytes decrease)
Output file size = 8688 bytes (1809 bytes = 17.23% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-43-2.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27297 bytes
Input file size = 27411 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21070
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21070
Output IDAT size = 21070 bytes (6227 bytes decrease)
Output file size = 21148 bytes (6263 bytes = 22.85% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-44-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11401 bytes
Input file size = 11491 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9447
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9447
Output IDAT size = 9447 bytes (1954 bytes decrease)
Output file size = 9525 bytes (1966 bytes = 17.11% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-45-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15845 bytes
Input file size = 15935 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12720
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12720
Output IDAT size = 12720 bytes (3125 bytes decrease)
Output file size = 12798 bytes (3137 bytes = 19.69% decrease)
* checking PDF version of manual ... [13s/14s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR