• using R Under development (unstable) (2025-02-15 r87726)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)     GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
• running under: Fedora Linux 40 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘RSDA/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘RSDA’ version ‘3.2.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘RSDA’ can be installed ... [40s/100s] OK See the install log for details.
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [8s/20s] OK
• checking whether the package can be loaded with stated dependencies ... [6s/17s] OK
• checking whether the package can be unloaded cleanly ... [6s/15s] OK
• checking whether the namespace can be loaded with stated dependencies ... [6s/15s] OK
• checking whether the namespace can be unloaded cleanly ... [8s/19s] OK
• checking loading without being on the library search path ... [7s/17s] OK
• checking whether startup messages can be suppressed ... [7s/19s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [68s/189s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [28s/74s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [9s/25s] OK   Running ‘testthat.R’ [9s/24s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [34m/62m] ERROR Error(s) in re-building vignettes: --- re-building ‘introduction.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-28-1.png 576x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 36617 bytes Input file size = 36743 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26166   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26166 Output IDAT size = 26166 bytes (10451 bytes decrease) Output file size = 26244 bytes (10499 bytes = 28.57% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-28-2.png 576x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 38887 bytes Input file size = 39013 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27823   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27823 Output IDAT size = 27823 bytes (11064 bytes decrease) Output file size = 27901 bytes (11112 bytes = 28.48% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-28-3.png 576x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 8914 bytes Input file size = 9004 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8136   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 7598   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 7598 Output IDAT size = 7598 bytes (1316 bytes decrease) Output file size = 7676 bytes (1328 bytes = 14.75% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-28-4.png 576x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11328 bytes Input file size = 11418 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9791   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9777   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9777 Output IDAT size = 9777 bytes (1551 bytes decrease) Output file size = 9855 bytes (1563 bytes = 13.69% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-29-1.png 576x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7076 bytes Input file size = 7934 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6165   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6165   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6165 Output IDAT size = 6165 bytes (911 bytes decrease) Output file size = 6243 bytes (1691 bytes = 21.31% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-30-1.png 576x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7750 bytes Input file size = 8608 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6714   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6699   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6699 Output IDAT size = 6699 bytes (1051 bytes decrease) Output file size = 6777 bytes (1831 bytes = 21.27% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-31-1.png 576x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7391 bytes Input file size = 8249 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6110   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6110 Output IDAT size = 6110 bytes (1281 bytes decrease) Output file size = 6188 bytes (2061 bytes = 24.98% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-38-1.png 576x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29950 bytes Input file size = 30064 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21578   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21578 Output IDAT size = 21578 bytes (8372 bytes decrease) Output file size = 21656 bytes (8408 bytes = 27.97% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-38-2.png 576x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31562 bytes Input file size = 31676 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24683   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24683 Output IDAT size = 24683 bytes (6879 bytes decrease) Output file size = 24761 bytes (6915 bytes = 21.83% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-42-1.png 576x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 30733 bytes Input file size = 30847 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22314   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22314 Output IDAT size = 22314 bytes (8419 bytes decrease) Output file size = 22392 bytes (8455 bytes = 27.41% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-42-2.png 576x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32103 bytes Input file size = 32217 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25854   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25854 Output IDAT size = 25854 bytes (6249 bytes decrease) Output file size = 25932 bytes (6285 bytes = 19.51% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-43-1.png 576x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 10407 bytes Input file size = 10497 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8610   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8610 Output IDAT size = 8610 bytes (1797 bytes decrease) Output file size = 8688 bytes (1809 bytes = 17.23% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-43-2.png 576x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27297 bytes Input file size = 27411 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21070   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21070 Output IDAT size = 21070 bytes (6227 bytes decrease) Output file size = 21148 bytes (6263 bytes = 22.85% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-44-1.png 576x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11401 bytes Input file size = 11491 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9447   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9447 Output IDAT size = 9447 bytes (1954 bytes decrease) Output file size = 9525 bytes (1966 bytes = 17.11% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/RSDA.Rcheck/vign_test/RSDA/vignettes/introduction_files/figure-html/unnamed-chunk-45-1.png 576x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15845 bytes Input file size = 15935 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12720   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12720 Output IDAT size = 12720 bytes (3125 bytes decrease) Output file size = 12798 bytes (3137 bytes = 19.69% decrease)
• checking PDF version of manual ... [13s/14s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR