Install log for 'RNifti'

* installing *source* package ‘RNifti’ ...
** package ‘RNifti’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... gcc-14
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc-14 accepts -g... yes
checking for gcc-14 option to enable C11 features... none needed
checking for library containing inflate... -lz
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc-14 (GCC) 14.2.0’
using C++ compiler: ‘g++-14 (GCC) 14.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RNifti/src'
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection  -DR_NO_REMAP -c main.cpp -o main.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c zzz.c -o zzz.o
In file included from ../inst/include/niftilib/nifti2_io.h:27,
                 from ../inst/include/RNifti.h:46,
                 from main.cpp:5:
../inst/include/RNifti/NiftiImage_print.h:6:9: warning: "R_NO_REMAP" redefined
    6 | #define R_NO_REMAP
      |         ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c znzlib/znzlib.c -o znzlib/znzlib.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c niftilib/nifti1_io.c -o niftilib/nifti1_io.o
niftilib/nifti1_io.c:449:14: warning: 'print_hex_vals' declared 'static' but never defined [-Wunused-function]
  449 | static int   print_hex_vals    (const char * data, size_t nbytes, FILE * fp);
      |              ^~~~~~~~~~~~~~
niftilib/nifti1_io.c:6135:14: warning: 'escapize_string' defined but not used [-Wunused-function]
 6135 | static char *escapize_string( const char * str )
      |              ^~~~~~~~~~~~~~~
niftilib/nifti1_io.c:3337:12: warning: 'compare_strlist' defined but not used [-Wunused-function]
 3337 | static int compare_strlist(const char * str, char ** strlist, int len)
      |            ^~~~~~~~~~~~~~~
niftilib/nifti1_io.c:3323:12: warning: 'make_lowercase' defined but not used [-Wunused-function]
 3323 | static int make_lowercase(char * str)
      |            ^~~~~~~~~~~~~~
niftilib/nifti1_io.c:3310:12: warning: 'make_uppercase' defined but not used [-Wunused-function]
 3310 | static int make_uppercase(char * str)
      |            ^~~~~~~~~~~~~~
niftilib/nifti1_io.c:3292:12: warning: 'is_mixedcase' defined but not used [-Wunused-function]
 3292 | static int is_mixedcase(const char * str)
      |            ^~~~~~~~~~~~
niftilib/nifti1_io.c:3276:12: warning: 'is_uppercase' defined but not used [-Wunused-function]
 3276 | static int is_uppercase(const char * str)
      |            ^~~~~~~~~~~~
niftilib/nifti1_io.c:363:29: warning: 'nifti_type_list' defined but not used [-Wunused-const-variable=]
  363 | static const nifti_type_ele nifti_type_list[] = {
      |                             ^~~~~~~~~~~~~~~
niftilib/nifti1_io.c:353:19: warning: 'gni_version' defined but not used [-Wunused-const-variable=]
  353 | static const char gni_version[] = NIFTI1_IO_SOURCE_VERSION " (16 Jun, 2022)";
      |                   ^~~~~~~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0   -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c niftilib/nifti2_io.c -o niftilib/nifti2_io.o
niftilib/nifti2_io.c:8250:14: warning: 'escapize_string' defined but not used [-Wunused-function]
 8250 | static char *escapize_string( const char * str )
      |              ^~~~~~~~~~~~~~~
niftilib/nifti2_io.c:4468:12: warning: 'print_hex_vals' defined but not used [-Wunused-function]
 4468 | static int print_hex_vals( const char * data, size_t nbytes, FILE * fp )
      |            ^~~~~~~~~~~~~~
g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o RNifti.so main.o zzz.o znzlib/znzlib.o niftilib/nifti1_io.o niftilib/nifti2_io.o -lz
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RNifti/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/RNifti/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/RNifti/src'
installing to /data/gannet/ripley/R/packages/tests-devel/RNifti.Rcheck/00LOCK-RNifti/00new/RNifti/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RNifti)