- using R Under development (unstable) (2024-11-18 r87340)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
- running under: Fedora Linux 36 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘PlaneGeometry/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘PlaneGeometry’ version ‘1.6.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘PlaneGeometry’ can be installed ... [55s/145s] OK
See the install log for details.
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [7s/50s] OK
- checking whether the package can be loaded with stated dependencies ... [6s/21s] OK
- checking whether the package can be unloaded cleanly ... [6s/26s] OK
- checking whether the namespace can be loaded with stated dependencies ... [7s/37s] OK
- checking whether the namespace can be unloaded cleanly ... [7s/30s] OK
- checking loading without being on the library search path ... [7s/41s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [43s/217s] OK
- checking Rd files ... [3s/16s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [19s/78s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [18s/106s] ERROR
Running ‘testthat.R’ [17s/105s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(PlaneGeometry)
>
> test_check("PlaneGeometry")
*** caught segfault ***
address 0x1, cause 'memory not mapped'
Traceback:
1: mexsmat(blksub, xx[(s2[i] + 1):s2[i + 1]], 0)
2: blkeig(blk, p, -M)
3: steplength(blk, X, dX, Xchol, invXchol)
4: sqlp_main(blk3, At3, C3, b, par, parbarrier3, X03, y0, Z03)
5: sqlp_base(blk = blk, At = At, b = b, C = C, OPTIONS = OPTIONS)
6: sdpt3r::minelips(pts)
7: LownerJohnEllipse(pts)
8: eval(code, test_env)
9: eval(code, test_env)
10: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error)
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
14: doTryCatch(return(expr), name, parentenv, handler)
15: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
16: tryCatchList(expr, classes, parentenv, handlers)
17: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
18: test_code(desc, code, env = parent.frame(), default_reporter = local_interactive_reporter())
19: test_that("LownerJohnEllipse", { set.seed(666) pts <- cbind(rnorm(30, sd = 2), rnorm(30)) ell <- LownerJohnEllipse(pts) expect_true(all(apply(pts, 1L, ell$contains)))})
20: eval(code, test_env)
21: eval(code, test_env)
22: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error)
23: doTryCatch(return(expr), name, parentenv, handler)
24: tryCatchOne(expr, names, parentenv, handlers[[1L]])
25: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
26: doTryCatch(return(expr), name, parentenv, handler)
27: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
28: tryCatchList(expr, classes, parentenv, handlers)
29: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
30: test_code(test = NULL, code = exprs, env = env, default_reporter = StopReporter$new())
31: source_file(path, env = env(env), desc = desc, error_call = error_call)
32: FUN(X[[i]], ...)
33: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)
34: doTryCatch(return(expr), name, parentenv, handler)
35: tryCatchOne(expr, names, parentenv, handlers[[1L]])
36: tryCatchList(expr, classes, parentenv, handlers)
37: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL})
38: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call))
39: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, error_call = error_call)
40: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel)
41: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed")
42: test_check("PlaneGeometry")
An irrecoverable exception occurred. R is aborting now ...
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [196s/542s] OK
- checking PDF version of manual ... [15s/41s] OK
- checking HTML version of manual ... [9s/23s] OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR