• using R Under development (unstable) (2024-06-28 r86849)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (GCC) 14.1.0     GNU Fortran (GCC) 14.1.0
• running under: Fedora Linux 36 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘NADIA/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘NADIA’ version ‘0.4.2’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘NADIA’ can be installed ... [58s/256s] OK See the install log for details.
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [8s/20s] OK
• checking whether the package can be loaded with stated dependencies ... [7s/18s] OK
• checking whether the package can be unloaded cleanly ... [7s/17s] OK
• checking whether the namespace can be loaded with stated dependencies ... [7s/20s] OK
• checking whether the namespace can be unloaded cleanly ... [8s/18s] OK
• checking loading without being on the library search path ... [8s/19s] OK
• checking whether startup messages can be suppressed ... [8s/27s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... NOTE Namespaces in Imports field not imported from:   ‘glmnet’ ‘mlr3learners’ ‘rpart’   All declared Imports should be used.
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [46s/192s] OK
• checking Rd files ... NOTE checkRd: (-1) PipeOpMice.Rd:33: Lost braces; missing escapes or markup?     33 | set of methods to chose. Avalible methods {"pmm", "midastouch", "sample", "cart", "rf"} Default 'pmm'. If seted on NULL this methods are used predictive mean matching (numeric data) logreg, logistic regression imputation (binary data, factor with 2 levels) polyreg, polytomous regression imputation for unordered categorical data (factor > 2 levels) polr, proportional odds model for (ordered, > 2 levels).        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [13s/61s] ERROR Running examples in ‘NADIA-Ex.R’ failed The error most likely occurred in: > ### Name: PipeOpOOR_B > ### Title: PipeOpOOR_B > ### Aliases: PipeOpOOR_B > > ### ** Examples > > { + + # Using debug learner for example purpose + + graph <- PipeOpOOR_B$new() %>>% LearnerClassifDebug$new() + graph_learner <- GraphLearner$new(graph) + + # Task with NA + set.seed(1) + resample(tsk("pima"), graph_learner, rsmp("cv", folds = 3)) + } Error in initialize(...) : object 'ParamLgl' not found Calls: %>>% ... .__ParamSet__initialize -> assert_list -> checkList -> %and% -> isTRUE Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [21s/322s] ERROR   Running ‘testthat.R’ [20s/314s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(NADIA)   Loading required package: mlr3   Loading required package: mlr3pipelines   Loading required package: paradox   >   > test_check("NADIA")   [1] "Error in doTryCatch(return(expr), name, parentenv, handler): No values with no missing values\n"   [ FAIL 5 | WARN 0 | SKIP 12 | PASS 47 ]      ══ Skipped tests (12) ══════════════════════════════════════════════════════════   • On CRAN (12): 'test_A.R:7:3', 'test_A.R:41:3', 'test_autotune.R:287:3',     'test_autotune.R:303:3', 'test_autotune.R:308:3', 'test_autotune.R:313:3',     'test_autotune.R:318:3', 'test_autotune.R:323:3', 'test_autotune.R:332:3',     'test_autotune.R:345:3', 'test_autotune.R:350:3', 'test_simplePipe.R:29:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test_advancePipeline.R:7:3'): Creting PipeLines ─────────────────────   Error in `initialize(...)`: object 'ParamUty' not found   Backtrace:        ▆     1. ├─testthat::expect_is(PipeOpAmelia$new(), "PipeOpImpute") at test_advancePipeline.R:7:3     2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")     3. │ └─rlang::eval_bare(expr, quo_get_env(quo))     4. └─PipeOpAmelia$new()     5. └─NADIA (local) initialize(...)     6. ├─super$initialize(...)     7. │ └─mlr3pipelines:::.__PipeOpImpute__initialize(...)     8. └─ParamSet$new(...)     9. └─paradox (local) initialize(...)    10. └─paradox:::.__ParamSet__initialize(...)    11. └─checkmate::assert_list(params, types = "Domain")    12. └─checkmate::checkList(...)    13. └─... %and% checkListTypes(x, types)    14. └─base::isTRUE(lhs)   ── Error ('test_advancePipeline.R:62:3'): Adavance pipe simple imputation ─────   Error in `initialize(...)`: object 'ParamUty' not found   Backtrace:        ▆     1. ├─testthat::expect_equal(...) at test_advancePipeline.R:62:3     2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")     3. │ └─rlang::eval_bare(expr, quo_get_env(quo))     4. └─PipeOpAmelia$new()     5. └─NADIA (local) initialize(...)     6. ├─super$initialize(...)     7. │ └─mlr3pipelines:::.__PipeOpImpute__initialize(...)     8. └─ParamSet$new(...)     9. └─paradox (local) initialize(...)    10. └─paradox:::.__ParamSet__initialize(...)    11. └─checkmate::assert_list(params, types = "Domain")    12. └─checkmate::checkList(...)    13. └─... %and% checkListTypes(x, types)    14. └─base::isTRUE(lhs)   ── Error ('test_mlworkflow.R:21:1'): (code run outside of `test_that()`) ───────   Error in `initialize(...)`: object 'ParamUty' not found   Backtrace:        ▆     1. └─PipeOpAmelia$new(parallel = FALSE) at test_mlworkflow.R:21:1     2. └─NADIA (local) initialize(...)     3. ├─super$initialize(...)     4. │ └─mlr3pipelines:::.__PipeOpImpute__initialize(...)     5. └─ParamSet$new(...)     6. └─paradox (local) initialize(...)     7. └─paradox:::.__ParamSet__initialize(...)     8. └─checkmate::assert_list(params, types = "Domain")     9. └─checkmate::checkList(...)    10. └─... %and% checkListTypes(x, types)    11. └─base::isTRUE(lhs)   ── Error ('test_simplePipe.R:21:3'): Creting OOR_B ─────────────────────────────   Error in `initialize(...)`: object 'ParamLgl' not found   Backtrace:        ▆     1. ├─testthat::expect_is(PipeOpOOR_B$new(), "PipeOpImpute") at test_simplePipe.R:21:3     2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")     3. │ └─rlang::eval_bare(expr, quo_get_env(quo))     4. └─PipeOpOOR_B$new()     5. └─NADIA (local) initialize(...)     6. └─ParamSet$new(...)     7. └─paradox (local) initialize(...)     8. └─paradox:::.__ParamSet__initialize(...)     9. └─checkmate::assert_list(params, types = "Domain")    10. └─checkmate::checkList(...)    11. └─... %and% checkListTypes(x, types)    12. └─base::isTRUE(lhs)   ── Error ('test_simulateMissing.R:27:3'): PipeOpSimulatedMissing Tests ─────────   Error in `initialize(...)`: object 'ParamDbl' not found   Backtrace:        ▆     1. ├─testthat::expect_true(...) at test_simulateMissing.R:27:3     2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")     3. │ └─rlang::eval_bare(expr, quo_get_env(quo))     4. └─PipeOpSimulateMissings$new()     5. └─NADIA (local) initialize(...)     6. └─ParamSet$new(...)     7. └─paradox (local) initialize(...)     8. └─paradox:::.__ParamSet__initialize(...)     9. └─checkmate::assert_list(params, types = "Domain")    10. └─checkmate::checkList(...)    11. └─... %and% checkListTypes(x, types)    12. └─base::isTRUE(lhs)      [ FAIL 5 | WARN 0 | SKIP 12 | PASS 47 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [33s/332s] ERROR Error(s) in re-building vignettes: --- re-building ‘Errors_Statistic_and_Handling.Rmd’ using rmarkdown Quitting from lines 96-105 [Lrn] (Errors_Statistic_and_Handling.Rmd) Error: processing vignette 'Errors_Statistic_and_Handling.Rmd' failed with diagnostics: object 'ParamDbl' not found --- failed re-building ‘Errors_Statistic_and_Handling.Rmd’ --- re-building ‘NADIA_examples_and_motivation.Rmd’ using rmarkdown Quitting from lines 116-132 [chunk1] (NADIA_examples_and_motivation.Rmd) Error: processing vignette 'NADIA_examples_and_motivation.Rmd' failed with diagnostics: object 'ParamDbl' not found --- failed re-building ‘NADIA_examples_and_motivation.Rmd’ SUMMARY: processing the following files failed:   ‘Errors_Statistic_and_Handling.Rmd’   ‘NADIA_examples_and_motivation.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [13s/39s] OK
• checking HTML version of manual ... [4s/16s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 3 ERRORs, 2 NOTEs