* installing *source* package ‘MDDC’ ...
** this is package ‘MDDC’ version ‘1.0.0’
** package ‘MDDC’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/MDDC/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c helper_functions.cpp -o helper_functions.o
helper_functions.cpp: In function ‘Eigen::MatrixXd get_expected_counts(const Eigen::MatrixXd&)’:
helper_functions.cpp:50:9: warning: unused variable ‘nRow’ [-Wunused-variable]
   50 |     int nRow = continTable.rows();
      |         ^~~~
helper_functions.cpp:51:9: warning: unused variable ‘nCol’ [-Wunused-variable]
   51 |     int nCol = continTable.cols();
      |         ^~~~
helper_functions.cpp: In function ‘Eigen::MatrixXd getZijMat(const Eigen::MatrixXd&, bool)’:
helper_functions.cpp:97:9: warning: unused variable ‘nRow’ [-Wunused-variable]
   97 |     int nRow = continTable.rows();
      |         ^~~~
helper_functions.cpp:98:9: warning: unused variable ‘nCol’ [-Wunused-variable]
   98 |     int nCol = continTable.cols();
      |         ^~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o MDDC.so RcppExports.o helper_functions.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/MDDC/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/MDDC/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/MDDC/src'
installing to /data/gannet/ripley/R/packages/tests-devel/MDDC.Rcheck/00LOCK-MDDC/00new/MDDC/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MDDC)