• using R Under development (unstable) (2024-12-17 r87446)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (GCC) 14.2.0     GNU Fortran (GCC) 14.2.0
• running under: Fedora Linux 36 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘GeoTox/DESCRIPTION’ ... OK
• this is package ‘GeoTox’ version ‘0.2.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘GeoTox’ can be installed ... [11s/31s] OK See the install log for details.
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [14s/35s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [98s/300s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [32s/104s] OK   Running ‘testthat.R’ [31s/102s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [30m/36m] ERROR Error(s) in re-building vignettes: --- re-building ‘introduction.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/GeoTox.Rcheck/vign_test/GeoTox/vignettes/introduction_files/figure-html/unnamed-chunk-3-1.png 672x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26389 bytes Input file size = 26503 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20886   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20886 Output IDAT size = 20886 bytes (5503 bytes decrease) Output file size = 20964 bytes (5539 bytes = 20.90% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/GeoTox.Rcheck/vign_test/GeoTox/vignettes/introduction_files/figure-html/unnamed-chunk-3-2.png 672x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 30087 bytes Input file size = 30201 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26572   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26572 Output IDAT size = 26572 bytes (3515 bytes decrease) Output file size = 26650 bytes (3551 bytes = 11.76% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/GeoTox.Rcheck/vign_test/GeoTox/vignettes/introduction_files/figure-html/unnamed-chunk-3-3.png 672x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 38053 bytes Input file size = 38179 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32452   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32452 Output IDAT size = 32452 bytes (5601 bytes decrease) Output file size = 32530 bytes (5649 bytes = 14.80% decrease) --- re-building ‘package_data.Rmd’ using rmarkdown --- finished re-building ‘package_data.Rmd’ SUMMARY: processing the following file failed:   ‘introduction.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR