* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/EquiTrends.Rcheck’
* using R Under development (unstable) (2025-02-14 r87716)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘EquiTrends/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘EquiTrends’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘EquiTrends’ can be installed ... [55s/67s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/EquiTrends-00install.html' for details.
* used C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [14s/17s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [17s/23s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [90s/115s] ERROR
  Running ‘testthat.R’ [90s/114s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(EquiTrends)
  > 
  > test_check("EquiTrends")
  [ FAIL 10 | WARN 0 | SKIP 9 | PASS 442 ]
  
  ══ Skipped tests (9) ═══════════════════════════════════════════════════════════
  • On CRAN (9): 'test-maxEquivTest-boot-input.R:4:3',
    'test-maxEquivTest-boot-input.R:67:4', 'test-maxEquivTest-ouput-boot.R:3:3',
    'test-maxEquivTest-output-IU.R:531:3', 'test-maxEquivTest-output-wild.R:2:3',
    'test-maxEquivTest-wild-input.R:3:3', 'test-maxEquivTest-wild-input.R:66:3',
    'test-meanEquivTest-results-methods.R:53:3',
    'test-rmsEquivTest-results.R:110:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-meanEquivTest-results-methods.R:43:3'): meanEquivTest return for matrix input and standard variance-covariance matrix ──
  meanEquivTest_results$minimum_equiv_threshold (`actual`) not equal to 0.242507044755375 (`expected`).
  
    `actual`: 0.12
  `expected`: 0.24
  ── Failure ('test-meanEquivTest-results-methods.R:51:3'): meanEquivTest return for matrix input and standard variance-covariance matrix ──
  `p_val` (`actual`) not equal to `alpha` (`expected`).
  
    `actual`: 0.49
  `expected`: 0.10
  ── Failure ('test-meanEquivTest-results-methods.R:150:3'): meanEquivTest return for HC-type variance-covariance matrix ──
  meanEquivTest_results$minimum_equiv_threshold (`actual`) not equal to 0.226873408151078 (`expected`).
  
    `actual`: 0.12
  `expected`: 0.23
  ── Failure ('test-meanEquivTest-results-methods.R:158:3'): meanEquivTest return for HC-type variance-covariance matrix ──
  `p_val` (`actual`) not equal to `alpha` (`expected`).
  
    `actual`: 0.50
  `expected`: 0.10
  ── Failure ('test-meanEquivTest-results-methods.R:330:3'): meanEquivTest return for CL-type variance-covariance matrix ──
  meanEquivTest_results$minimum_equiv_threshold (`actual`) not equal to 0.163227373735974 (`expected`).
  
    `actual`: 0.118
  `expected`: 0.163
  ── Failure ('test-meanEquivTest-results-methods.R:338:3'): meanEquivTest return for CL-type variance-covariance matrix ──
  `p_val` (`actual`) not equal to `alpha` (`expected`).
  
    `actual`: 0.50
  `expected`: 0.10
  ── Failure ('test-meanEquivTest-results-methods.R:512:3'): meanEquivTest return for HAC type variance-covariance matrix ──
  meanEquivTest_results$minimum_equiv_threshold (`actual`) not equal to 0.238900256760278 (`expected`).
  
    `actual`: 0.12
  `expected`: 0.24
  ── Failure ('test-meanEquivTest-results-methods.R:520:3'): meanEquivTest return for HAC type variance-covariance matrix ──
  `p_val` (`actual`) not equal to `alpha` (`expected`).
  
    `actual`: 0.49
  `expected`: 0.10
  ── Failure ('test-meanEquivTest-results-methods.R:691:3'): meanEquivTest return for CL-type variance-covariance matrix (no cluster index) ──
  meanEquivTest_results$minimum_equiv_threshold (`actual`) not equal to 0.238615231822536 (`expected`).
  
    `actual`: 0.12
  `expected`: 0.24
  ── Failure ('test-meanEquivTest-results-methods.R:699:3'): meanEquivTest return for CL-type variance-covariance matrix (no cluster index) ──
  `p_val` (`actual`) not equal to `alpha` (`expected`).
  
    `actual`: 0.49
  `expected`: 0.10
  
  [ FAIL 10 | WARN 0 | SKIP 9 | PASS 442 ]
  Error: Test failures
  Execution halted
* checking PDF version of manual ... [8s/10s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR