- using R Under development (unstable) (2025-02-28 r87848)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
- running under: Fedora Linux 40 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘DrugUtilisation/DESCRIPTION’ ... OK
- this is package ‘DrugUtilisation’ version ‘0.8.2’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘DrugUtilisation’ can be installed ... [14s/37s] OK
See the install log for details.
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘addCumulativeDose.Rd’ ‘addCumulativeQuantity.Rd’ ‘addDailyDose.Rd’
‘addDaysExposed.Rd’ ‘addDaysPrescribed.Rd’ ‘addDrugRestart.Rd’
‘addDrugUtilisation.R’ ‘addDrugUtilisation.Rd’ ‘addIndication.Rd’
‘addInitialDailyDose.Rd’ ‘addInitialExposureDuration.Rd’
‘addInitialQuantity.Rd’ ‘addIntersect.R’ ‘addNumberEras.Rd’
‘addNumberExposures.Rd’ ‘addRoute.Rd’ ‘addTimeToExposure.Rd’
‘addTreatment.Rd’ ‘benchmarkDrugUtilisation.R’ ‘cohortUtilities.R’
‘dailyDose.R’ ‘erafyCohort.R’ ‘erafyCohort.Rd’
‘generateAtcCohortSet.Rd’ ‘generateDrugUtilisationCohortSet.R’
‘generateDrugUtilisationCohortSet.Rd’ ‘generateIngredientCohortSet.R’
‘generateIngredientCohortSet.Rd’ ‘mockDrugUtilisation.R’ ‘pattern.R’
‘plotDrugUtilisation.Rd’ ‘plotIndication.Rd’
‘plotProportionOfPatientsCovered.Rd’ ‘plots.R’ ‘require.R’
‘requireDrugInDateRange.Rd’ ‘requireIsFirstDrugEntry.Rd’
‘requireObservationBeforeDrug.Rd’ ‘requirePriorDrugWashout.Rd’
‘summariseDrugRestart.R’ ‘summariseDrugRestart.Rd’
‘summariseDrugUtilisation.R’ ‘summariseDrugUtilisation.Rd’
‘summariseIndication.Rd’ ‘summariseIntersect.R’
‘summariseProportionOfPatientsCovered.R’ ‘summariseTreatment.Rd’
‘tableDrugRestart.Rd’ ‘tableDrugUtilisation.Rd’ ‘tableIndication.Rd’
‘tableProportionOfPatientsCovered.Rd’ ‘tableTreatment.Rd’ ‘tables.R’
‘validate.R’
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [23s/58s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking R/sysdata.rda ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [12m/17m] OK
Running ‘testthat.R’ [12m/17m]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [5m/13m] OK
- checking PDF version of manual ... [11s/31s] OK
- checking HTML version of manual ... [5s/13s] OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 NOTE