* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/D4TAlink.light.Rcheck’ * using R Under development (unstable) (2025-03-02 r87864) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3) * running under: Fedora Linux 40 (Workstation Edition) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘D4TAlink.light/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘D4TAlink.light’ version ‘2.1.17’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘D4TAlink.light’ can be installed ... [20s/41s] OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/D4TAlink.light-00install.html' for details. * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [5s/13s] OK * checking whether the package can be loaded with stated dependencies ... [5s/12s] OK * checking whether the package can be unloaded cleanly ... [6s/14s] OK * checking whether the namespace can be loaded with stated dependencies ... [5s/13s] OK * checking whether the namespace can be unloaded cleanly ... [5s/11s] OK * checking loading without being on the library search path ... [5s/12s] OK * checking whether startup messages can be suppressed ... [5s/11s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [27s/54s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [6s/12s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [21s/54s] ERROR Running ‘testthat.R’ [20s/53s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # See https://github.com/tidyverse/dplyr/blob/main/tests/ > library(testthat) > library(D4TAlink.light) Loading required package: jsonlite Loading required package: openssl Linking to: OpenSSL 3.2.2 4 Jun 2024 > > test_check("D4TAlink.light") [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] â•â• Failed tests â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â• ── Error ('test01.R:42:5'): (code run outside of `test_that()`) ──────────────── Error in `strsplit(x, as.character(split), fixed, perl, useBytes)`: NA in coercion to boolean Backtrace: â–† 1. └─D4TAlink.light::renderTaskRmd(task) at test01.R:42:5 2. └─rmarkdown::render(...) 3. └─rmarkdown:::create_output_format(output_format$name, output_format$options) 4. ├─base::do.call(output_format_func, options) 5. └─officedown (local) `<fn>`(toc = TRUE) 6. └─officedown:::get_fun(base_format) 7. └─base::strsplit(x, split = "::", x, fixed = TRUE) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [22s/64s] OK * checking PDF version of manual ... [10s/24s] OK * checking HTML version of manual ... [5s/10s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR