• using R Under development (unstable) (2025-02-21 r87787)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)     GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
• running under: Fedora Linux 40 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘CohortSurvival/DESCRIPTION’ ... OK
• this is package ‘CohortSurvival’ version ‘0.6.2’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘CohortSurvival’ can be installed ... [11s/25s] OK See the install log for details.
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... NOTE   Missing dependency on R >= 4.1.0 because package code uses the pipe   |> or function shorthand \(...) syntax added in R 4.1.0.   File(s) using such syntax:     ‘inputValidation.R’ ‘plotSurvival.R’
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [16s/25s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [11m/22m] ERROR   Running ‘testthat.R’ [11m/22m] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/tests.html   > # * https://testthat.r-lib.org/reference/test_package.html#special-files   >   > library(testthat)   > library(CohortSurvival)   >   > test_check("CohortSurvival")   Starting 2 test processes   [ FAIL 1 | WARN 42 | SKIP 46 | PASS 39 ]      ══ Skipped tests (46) ══════════════════════════════════════════════════════════   • On CRAN (46): 'test-addCohortSurvival.R:71:3',     'test-addCohortSurvival.R:158:3', 'test-addCohortSurvival.R:271:3',     'test-addCohortSurvival.R:377:3', 'test-addCohortSurvival.R:489:3',     'test-addCohortSurvival.R:575:3', 'test-addCohortSurvival.R:675:3',     'test-addCohortSurvival.R:762:3', 'test-generateDeathCohort.R:2:3',     'test-generateDeathCohort.R:61:3', 'test-generateDeathCohort.R:128:3',     'test-generateDeathCohort.R:194:3', 'test-generateDeathCohort.R:261:3',     'test-generateDeathCohort.R:349:3', 'test-generateDeathCohort.R:449:3',     'test-mockMGUS2cdm.R:2:3', 'test-plotSurvival.R:2:3',     'test-plotSurvival.R:19:3', 'test-plotSurvival.R:37:3',     'test-plotSurvival.R:57:3', 'test-plotSurvival.R:77:3',     'test-plotSurvival.R:98:3', 'test-plotSurvival.R:129:3',     'test-plotSurvival.R:149:3', 'test-plotSurvival.R:172:3',     'test-plotSurvival.R:191:3', 'test-tableSurvival.R:2:3',     'test-tableSurvival.R:88:3', 'test-estimateSurvival.R:87:3',     'test-estimateSurvival.R:126:3', 'test-estimateSurvival.R:176:3',     'test-estimateSurvival.R:342:3', 'test-estimateSurvival.R:556:3',     'test-estimateSurvival.R:707:3', 'test-estimateSurvival.R:1232:3',     'test-estimateSurvival.R:1358:3', 'test-estimateSurvival.R:1380:3',     'test-estimateSurvival.R:1455:3', 'test-estimateSurvival.R:1651:3',     'test-estimateSurvival.R:1775:3', 'test-estimateSurvival.R:1805:3',     'test-estimateSurvival.R:1824:3', 'test-estimateSurvival.R:1860:3',     'test-estimateSurvival.R:1995:3', 'test-estimateSurvival.R:2124:3',     'test-estimateSurvival.R:2234:5'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-reexports-omopgenerics.R:15:3'): omopgenerics reexports work ───   Error in `tempdir(check)`: NA in coercion to Rboolean   Backtrace:       ▆    1. └─base::tempdir("result") at test-reexports-omopgenerics.R:15:3      [ FAIL 1 | WARN 42 | SKIP 46 | PASS 39 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [270s/594s] OK
• checking PDF version of manual ... [7s/14s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR, 1 NOTE