* installing *source* package ‘ClustAssess’ ...
** this is package ‘ClustAssess’ version ‘1.0.0’
** package ‘ClustAssess’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/ClustAssess/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c calculate_ecs.cpp -o calculate_ecs.o
calculate_ecs.cpp: In function ‘double disjointECSaverage(Rcpp::IntegerVector, Rcpp::IntegerVector)’:
calculate_ecs.cpp:52:13: warning: unused variable ‘cluster1’ [-Wunused-variable]
   52 |         int cluster1, cluster2;
      |             ^~~~~~~~
calculate_ecs.cpp:52:23: warning: unused variable ‘cluster2’ [-Wunused-variable]
   52 |         int cluster1, cluster2;
      |                       ^~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c calculate_pac.cpp -o calculate_pac.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c optimise_snn.cpp -o optimise_snn.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c update_connectivity.cpp -o update_connectivity.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c wilcox.cpp -o wilcox.o
wilcox.cpp: In function ‘Rcpp::NumericVector wilcox_test(Rcpp::IntegerMatrix, int, int)’:
wilcox.cpp:42:13: warning: unused variable ‘max’ [-Wunused-variable]
   42 |         int max = 0;
      |             ^~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o ClustAssess.so RcppExports.o calculate_ecs.o calculate_pac.o optimise_snn.o update_connectivity.o wilcox.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/ClustAssess/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/ClustAssess/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/ClustAssess/src'
installing to /data/gannet/ripley/R/packages/tests-devel/ClustAssess.Rcheck/00LOCK-ClustAssess/00new/ClustAssess/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ClustAssess)