* installing *source* package ‘ClusVis’ ...
** this is package ‘ClusVis’ version ‘1.2.0’
** package ‘ClusVis’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/ClusVis/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/mvtnorm/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/mvtnorm/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c clusvis.cpp -o clusvis.o
clusvis.cpp: In function ‘arma::Row<double> convertMatToVec(arma::Mat<double>)’:
clusvis.cpp:29:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   29 |   for (int j=0; j<mat.n_cols; j++){
      |                 ~^~~~~~~~~~~
clusvis.cpp:30:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   30 |     for (int i=j; i<(mat.n_rows-1); i++){
      |                   ~^~~~~~~~~~~~~~~
clusvis.cpp: In function ‘arma::Row<double> computeGradient(const arma::Col<double>&, const arma::Mat<double>&, const arma::Mat<double>&)’:
clusvis.cpp:107:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  107 |   for (int k=0; k<grr.n_cols; k++)
      |                 ~^~~~~~~~~~~
clusvis.cpp:113:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
  113 |   for (int i=0; i<(loguref.n_rows); i++)
      |                 ~^~~~~~~~~~~~~~~~~
clusvis.cpp: In function ‘Rcpp::NumericVector computeLikelihoodCPP(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericMatrix, Rcpp::NumericMatrix)’:
clusvis.cpp:159:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  159 |   for (int j=0; j<prop.size(); j++) prop[j] = Rprop[j];
      |                 ~^~~~~~~~~~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o ClusVis.so RcppExports.o clusvis.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/ClusVis/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/ClusVis/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/ClusVis/src'
installing to /data/gannet/ripley/R/packages/tests-devel/ClusVis.Rcheck/00LOCK-ClusVis/00new/ClusVis/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ClusVis)