* installing *source* package ‘Ckmeans.1d.dp’ ...
** package ‘Ckmeans.1d.dp’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (GCC) 14.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Ckmeans.1d.dp/src'
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c Ckmeans.1d.dp.cpp -o Ckmeans.1d.dp.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c Ckmeans.1d.dp_main.cpp -o Ckmeans.1d.dp_main.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c EWL2_dynamic_prog.cpp -o EWL2_dynamic_prog.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c EWL2_fill_SMAWK.cpp -o EWL2_fill_SMAWK.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c EWL2_fill_log_linear.cpp -o EWL2_fill_log_linear.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c EWL2_fill_quadratic.cpp -o EWL2_fill_quadratic.o
EWL2_fill_SMAWK.cpp: In function 'void EWL2::reduce_in_place(int, int, int, int, const std::vector<long unsigned int>&, std::vector<long unsigned int>&, const std::vector<std::vector<double> >&, const std::vector<std::vector<long unsigned int> >&, const std::vector<double>&, const std::vector<double>&)':
EWL2_fill_SMAWK.cpp:46:8: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<long unsigned int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
46 | if(N >= js.size()) {
| ~~^~~~~~~~~~~~
EWL2_fill_SMAWK.cpp:56:11: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
56 | while(m > N) { // js_reduced has more than N positions / columns
| ~~^~~
EWL2_fill_SMAWK.cpp:90:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
90 | for(int r=(left+1); r < m; ++r) {
| ~~^~~
EWL2_fill_SMAWK.cpp: In function 'void EWL2::fill_even_positions(int, int, int, int, const std::vector<long unsigned int>&, std::vector<std::vector<double> >&, std::vector<std::vector<long unsigned int> >&, const std::vector<double>&, const std::vector<double>&)':
EWL2_fill_SMAWK.cpp:135:17: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
135 | for(++ r; r < n && js[r]<=jmax; r++) {
| ~~^~~
EWL2_fill_SMAWK.cpp:135:29: warning: comparison of integer expressions of different signedness: 'const __gnu_cxx::__alloc_traits<std::allocator<long unsigned int>, long unsigned int>::value_type' {aka 'const long unsigned int'} and 'int' [-Wsign-compare]
135 | for(++ r; r < n && js[r]<=jmax; r++) {
EWL2_fill_SMAWK.cpp:139:15: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare]
139 | if(jabs > i) break;
| ~~~~~^~~
EWL2_fill_SMAWK.cpp: In function 'void EWL2::find_min_from_candidates(int, int, int, int, const std::vector<long unsigned int>&, std::vector<std::vector<double> >&, std::vector<std::vector<long unsigned int> >&, const std::vector<double>&, const std::vector<double>&)':
EWL2_fill_SMAWK.cpp:187:16: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare]
187 | if(j_abs > i) break;
| ~~~~~~^~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c MCW_fill_SMAWK.cpp -o MCW_fill_SMAWK.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c MCW_functions.cpp -o MCW_functions.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c MCW_main.cpp -o MCW_main.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c dynamic_prog.cpp -o dynamic_prog.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c fill_SMAWK.cpp -o fill_SMAWK.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c fill_log_linear.cpp -o fill_log_linear.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c fill_quadratic.cpp -o fill_quadratic.o
fill_SMAWK.cpp: In function 'void reduce_in_place(int, int, int, int, const std::vector<long unsigned int>&, std::vector<long unsigned int>&, const std::vector<std::vector<double> >&, const std::vector<std::vector<long unsigned int> >&, const std::vector<double>&, const std::vector<double>&, const std::vector<double>&, const std::vector<double>&, DISSIMILARITY)':
fill_SMAWK.cpp:56:8: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<long unsigned int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
56 | if(N >= js.size()) {
| ~~^~~~~~~~~~~~
fill_SMAWK.cpp:66:11: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
66 | while(m > N) { // js_reduced has more than N positions / columns
| ~~^~~
fill_SMAWK.cpp:100:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
100 | for(int r=(left+1); r < m; ++r) {
| ~~^~~
fill_SMAWK.cpp: In function 'void fill_even_positions(int, int, int, int, const std::vector<long unsigned int>&, std::vector<std::vector<double> >&, std::vector<std::vector<long unsigned int> >&, const std::vector<double>&, const std::vector<double>&, const std::vector<double>&, const std::vector<double>&, DISSIMILARITY)':
fill_SMAWK.cpp:148:17: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
148 | for(++ r; r < n && js[r]<=jmax; r++) {
| ~~^~~
fill_SMAWK.cpp:148:29: warning: comparison of integer expressions of different signedness: 'const __gnu_cxx::__alloc_traits<std::allocator<long unsigned int>, long unsigned int>::value_type' {aka 'const long unsigned int'} and 'int' [-Wsign-compare]
148 | for(++ r; r < n && js[r]<=jmax; r++) {
fill_SMAWK.cpp:152:15: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare]
152 | if(jabs > i) break;
| ~~~~~^~~
fill_SMAWK.cpp: In function 'void find_min_from_candidates(int, int, int, int, const std::vector<long unsigned int>&, std::vector<std::vector<double> >&, std::vector<std::vector<long unsigned int> >&, const std::vector<double>&, const std::vector<double>&, const std::vector<double>&, const std::vector<double>&, DISSIMILARITY)':
fill_SMAWK.cpp:203:16: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare]
203 | if(j_abs > i) break;
| ~~~~~~^~~
MCW_functions.cpp: In function 'void MCW_fill_dp_matrix(const std::vector<double>&, const std::vector<std::vector<double> >&, std::vector<std::vector<double> >&, std::vector<std::vector<long unsigned int> >&, const std::string&)':
MCW_functions.cpp:101:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'const int' [-Wsign-compare]
101 | for (size_t l = 0; l < W; l++) {
| ~~^~~
MCW_functions.cpp:113:30: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'const int' [-Wsign-compare]
113 | for (size_t l = 0; l < W; l++) {
| ~~^~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c select_levels.cpp -o select_levels.o
MCW_fill_SMAWK.cpp: In function 'void MCW_reduce_in_place(int, int, int, int, const std::vector<long unsigned int>&, std::vector<long unsigned int>&, const std::vector<std::vector<double> >&, const std::vector<std::vector<long unsigned int> >&, const std::vector<std::vector<double> >&, const std::vector<double>&, const std::vector<std::vector<double> >&)':
MCW_fill_SMAWK.cpp:25:8: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<long unsigned int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
25 | if(N >= js.size()) {
| ~~^~~~~~~~~~~~
MCW_fill_SMAWK.cpp:35:11: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
35 | while(m > N) { // js_reduced has more than N positions / columns
| ~~^~~
MCW_fill_SMAWK.cpp:69:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
69 | for(int r=(left+1); r < m; ++r) {
| ~~^~~
MCW_fill_SMAWK.cpp: In function 'void MCW_fill_even_positions(int, int, int, int, const std::vector<long unsigned int>&, std::vector<std::vector<double> >&, std::vector<std::vector<long unsigned int> >&, const std::vector<std::vector<double> >&, const std::vector<double>&, const std::vector<std::vector<double> >&)':
MCW_fill_SMAWK.cpp:116:17: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
116 | for(++ r; r < n && js[r]<=jmax; r++) {
| ~~^~~
MCW_fill_SMAWK.cpp:116:29: warning: comparison of integer expressions of different signedness: 'const __gnu_cxx::__alloc_traits<std::allocator<long unsigned int>, long unsigned int>::value_type' {aka 'const long unsigned int'} and 'int' [-Wsign-compare]
116 | for(++ r; r < n && js[r]<=jmax; r++) {
MCW_fill_SMAWK.cpp:120:15: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare]
120 | if(jabs > i) break;
| ~~~~~^~~
MCW_fill_SMAWK.cpp: In function 'void MCW_find_min_from_candidates(int, int, int, int, const std::vector<long unsigned int>&, std::vector<std::vector<double> >&, std::vector<std::vector<long unsigned int> >&, const std::vector<std::vector<double> >&, const std::vector<double>&, const std::vector<std::vector<double> >&)':
MCW_fill_SMAWK.cpp:169:16: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long unsigned int'} and 'int' [-Wsign-compare]
169 | if(j_abs > i) break;
| ~~~~~~^~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c weighted_select_levels.cpp -o weighted_select_levels.o
MCW_functions.cpp: In function 'void MCW_optimal_zoning(const std::vector<double>&, const std::vector<std::vector<double> >&, size_t, size_t, std::vector<int>&, std::vector<double>&, std::vector<double>&, std::vector<double>&, std::vector<double>&, std::string, std::string)':
MCW_functions.cpp:551:9: warning: storing the address of local variable 'x_sorted' in 'spx' [-Wdangling-pointer=]
551 | spx = & x_sorted;
| ~~~~^~~~~~~~~~~~
MCW_functions.cpp:542:23: note: 'x_sorted' declared here
542 | std::vector<double> x_sorted(x);
| ^~~~~~~~
MCW_functions.cpp:509:36: note: 'spx' declared here
509 | static const std::vector<double> * spx;
| ^~~
g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o Ckmeans.1d.dp.so Ckmeans.1d.dp.o Ckmeans.1d.dp_main.o EWL2_dynamic_prog.o EWL2_fill_SMAWK.o EWL2_fill_log_linear.o EWL2_fill_quadratic.o MCW_fill_SMAWK.o MCW_functions.o MCW_main.o RcppExports.o dynamic_prog.o fill_SMAWK.o fill_log_linear.o fill_quadratic.o select_levels.o weighted_select_levels.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Ckmeans.1d.dp/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Ckmeans.1d.dp/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Ckmeans.1d.dp/src'
installing to /data/gannet/ripley/R/packages/tests-devel/Ckmeans.1d.dp.Rcheck/00LOCK-Ckmeans.1d.dp/00new/Ckmeans.1d.dp/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Ckmeans.1d.dp)