* installing *source* package ‘COveR’ ... ** package ‘COveR’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc-14 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-14 accepts -g... yes checking for gcc-14 option to enable C11 features... none needed checking for gsl-config... /usr/bin/gsl-config configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-14 (GCC) 14.2.0’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/COveR/src' gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/icmeans/R_icmeans.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/icmeans/R_icmeans.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/icmeans/dists/ic_hausdorff.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/icmeans/dists/ic_hausdorff.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/icmeans/dists/ic_euclid.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/icmeans/dists/ic_euclid.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/icmeans/icmeans.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/icmeans/icmeans.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/r2okm/r2okm.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/r2okm/r2okm.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/r2okm/R_r2okm.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/r2okm/R_r2okm.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/neokm/neokm.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/neokm/neokm.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/neokm/R_neokm.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/neokm/R_neokm.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/r1okm/r1okm.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/r1okm/r1okm.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/r1okm/R_r1okm.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/r1okm/R_r1okm.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/iokm/dists/hausdorff/io_hausdorff_mean.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/iokm/dists/hausdorff/io_hausdorff_mean.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/iokm/dists/hausdorff/io_hausdorff_join.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/iokm/dists/hausdorff/io_hausdorff_join.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/iokm/dists/hausdorff/io_hausdorff_meet.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/iokm/dists/hausdorff/io_hausdorff_meet.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/iokm/dists/hausdorff/io_hausdorff_sum.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/iokm/dists/hausdorff/io_hausdorff_sum.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/iokm/dists/io_hausdorff.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/iokm/dists/io_hausdorff.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/iokm/dists/io_euclid.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/iokm/dists/io_euclid.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/iokm/dists/euclid/io_euclid_mean.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/iokm/dists/euclid/io_euclid_mean.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/iokm/dists/euclid/io_euclid_sum.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/iokm/dists/euclid/io_euclid_sum.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/iokm/dists/euclid/io_euclid_join.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/iokm/dists/euclid/io_euclid_join.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/iokm/dists/euclid/io_euclid_meet.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/iokm/dists/euclid/io_euclid_meet.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/iokm/iokm.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/iokm/iokm.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/iokm/R_iokm.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/iokm/R_iokm.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/helpers.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/helpers.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/COveR-init.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/COveR-init.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/interval.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/interval.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/ikmeans/dists/ik_euclid.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/ikmeans/dists/ik_euclid.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/ikmeans/dists/ik_hausdorff.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/ikmeans/dists/ik_hausdorff.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/ikmeans/ikmeans.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/ikmeans/ikmeans.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/ikmeans/R_ikmeans.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/ikmeans/R_ikmeans.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/ineokm/ineokm.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/ineokm/ineokm.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/ineokm/R_ineokm.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/ineokm/R_ineokm.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/okm/okm.c -o /data/gannet/ripley/R/packages/tests-devel/COveR/src/okm/okm.o gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -I/usr/include -I. -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c /data/gannet/ripley/R/packages/tests-devel/COveR/src/distance.c -o 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make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/COveR/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/COveR/src' installing to /data/gannet/ripley/R/packages/tests-devel/COveR.Rcheck/00LOCK-COveR/00new/COveR/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (COveR)