Install log for 'Ball'

* installing *source* package ‘Ball’ ...
** package ‘Ball’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (GCC) 14.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Ball/src'
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD  -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c BD.c -o BD.o
BD.c: In function 'BD':
BD.c:196: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  196 | #pragma omp parallel
BD.c:201: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
  201 | #pragma omp for
BD.c: In function 'UBD':
BD.c:285: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  285 | #pragma omp parallel
BD.c:290: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
  290 | #pragma omp for
BD.c: In function 'KBD':
BD.c:684: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  684 | #pragma omp parallel
BD.c:689: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
  689 | #pragma omp for
BD.c: In function 'UKBD':
BD.c:941: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  941 | #pragma omp parallel
BD.c:944: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
  944 | #pragma omp for
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD  -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c BI.c -o BI.o
BI.c: In function 'BI':
BI.c:372: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  372 | #pragma omp parallel
BI.c:376: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
  376 | #pragma omp for
BI.c:413: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  413 | #pragma omp parallel
BI.c:417: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
  417 | #pragma omp for
BI.c: In function 'UBI':
BI.c:542: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  542 | #pragma omp parallel
BI.c:547: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
  547 | #pragma omp for
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD  -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c ball_init.c -o ball_init.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD  -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c bcor.c -o bcor.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD  -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c bd_gwas.c -o bd_gwas.o
bd_gwas.c: In function 'bd_gwas':
bd_gwas.c:216: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  216 | #pragma omp parallel
bd_gwas.c:220: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
  220 | #pragma omp for
bcor.c: In function '_bcor_test':
bcor.c:449: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  449 | #pragma omp parallel
bcor.c:456: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
  456 | #pragma omp for
bcor.c: In function '_u_bcor_test':
bcor.c:536: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  536 | #pragma omp parallel
bcor.c:545: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
  545 | #pragma omp for
bcor.c: In function '_bcor_k_sample':
bcor.c:822: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  822 | #pragma omp parallel
bcor.c:825: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
  825 | #pragma omp for
bd_gwas.c:246:5: warning: 'batch_num' may be used uninitialized [-Wmaybe-uninitialized]
  246 |     free_int_matrix(randn_mat, batch_num, n - 1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bd_gwas.c:203:9: note: 'batch_num' was declared here
  203 |     int batch_num, fix_batch_num;
      |         ^~~~~~~~~
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD  -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c bdd_matrix.c -o bdd_matrix.o
bdd_matrix.c: In function 'bdd_matrix_bias_two_group':
bdd_matrix.c:95: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
   95 | #pragma omp parallel
bdd_matrix.c:98: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
   98 | #pragma omp for
bdd_matrix.c: In function 'bdd_matrix_bias':
bdd_matrix.c:162: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  162 | #pragma omp parallel
bdd_matrix.c:165: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
  165 | #pragma omp for
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD  -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c kbcov.c -o kbcov.o
kbcov.c: In function 'KBCOV':
kbcov.c:143: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  143 | #pragma omp parallel
kbcov.c:147: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
  147 | #pragma omp for
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD  -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c kbd.c -o kbd.o
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD  -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c surv.c -o surv.o
kbd.c: In function 'KBD3':
kbd.c:493: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  493 | #pragma omp parallel
kbd.c:500: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
  500 | #pragma omp for
kbd.c: In function 'bd_gwas_screening':
kbd.c:674: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  674 | #pragma omp parallel
kbd.c:678: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
  678 | #pragma omp for
kbd.c:769: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  769 | #pragma omp parallel
kbd.c:775: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
  775 | #pragma omp for
kbd.c: In function 'bd_gwas_refining_single':
kbd.c:957: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  957 | #pragma omp parallel
kbd.c:963: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
  963 | #pragma omp for
kbd.c: In function 'bd_gwas_refining':
kbd.c:1121: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
 1121 | #pragma omp parallel
kbd.c:1127: warning: ignoring '#pragma omp for' [-Wunknown-pragmas]
 1127 | #pragma omp for
gcc-14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DR_BUILD  -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c utilities.c -o utilities.o
gcc-14 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o Ball.so BD.o BI.o ball_init.o bcor.o bd_gwas.o bdd_matrix.o kbcov.o kbd.o surv.o utilities.o -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Ball/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Ball/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Ball/src'
installing to /data/gannet/ripley/R/packages/tests-devel/Ball.Rcheck/00LOCK-Ball/00new/Ball/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Ball)