* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/BLSM.Rcheck’
* using R Under development (unstable) (2025-02-14 r87716)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘BLSM/DESCRIPTION’ ... OK
* this is package ‘BLSM’ version ‘0.1.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BLSM’ can be installed ... [44s/47s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/BLSM-00install.html' for details.
* used C++ compiler: ‘g++ (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)’
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) estimate_latent_positions.Rd:51: Lost braces
    51 | \item \code{Alpha }{\eqn{\alpha} values from the sampled iterations}
       |                    ^
checkRd: (-1) estimate_latent_positions.Rd:52: Lost braces
    52 | \item \code{Likelihood }{Log-likelihood values from the sampled iterations}
       |                         ^
checkRd: (-1) estimate_latent_positions.Rd:53-57: Lost braces
    53 | \item \code{Iterations }{Latent space coordinates from the sampled iterations. Latent positions are stored in a
       |                         ^
checkRd: (-1) estimate_latent_positions.Rd:58: Lost braces
    58 | \item \code{StartingPositions }{Latent space coordinates right after the initialization step. In the non-Procrustean framework starting distances are given instead.}
       |                                ^
checkRd: (-1) estimate_latent_positions.Rd:59: Lost braces
    59 | \item \code{Matrix }{Original matrices of the network (adjacency and BLSM weights)}
       |                     ^
checkRd: (-1) estimate_latent_positions.Rd:60: Lost braces
    60 | \item \code{Parameters }{List of parameters specified during the call to \link[BLSM]{estimate_latent_positions}}
       |                         ^
checkRd: (-1) example_blsm_obj.Rd:9: Lost braces
     9 | \item \code{Alpha }{\eqn{\alpha} values from the sampled iterations}
       |                    ^
checkRd: (-1) example_blsm_obj.Rd:10: Lost braces
    10 | \item \code{Likelihood }{Log-likelihood values from the sampled iterations}
       |                         ^
checkRd: (-1) example_blsm_obj.Rd:11-15: Lost braces
    11 | \item \code{Iterations }{Latent space coordinates from the sampled iterations. Latent positions are stored in a
       |                         ^
checkRd: (-1) example_blsm_obj.Rd:16: Lost braces
    16 | \item \code{StartingPositions }{Latent space coordinates right after the initialization step. In the non-Procrustean framework starting distances are given instead.}
       |                                ^
checkRd: (-1) example_blsm_obj.Rd:17: Lost braces
    17 | \item \code{Matrix }{Original matrices of the network (adjacency and BLSM weights)}
       |                     ^
checkRd: (-1) example_blsm_obj.Rd:18: Lost braces
    18 | \item \code{Parameters }{List of parameters specified during the call to \link[BLSM]{estimate_latent_positions}}
       |                         ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE