* installing *source* package ‘Apollonius’ ...
** package ‘Apollonius’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (GCC) 14.2.0’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Apollonius/src'
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppCGAL/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -DCGAL_HEADER_ONLY=1 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c Apollonius.cpp -o Apollonius.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppCGAL/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -DC99_INLINE_SEMANTICS=0 -DCGAL_HEADER_ONLY=1 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/cstdfloat.hpp:27,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/float128_functions.hpp:15,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/fpclassify.hpp:13,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/default_ops.hpp:15,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/detail/generic_interconvert.hpp:12,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/number.hpp:12,
from /data/gannet/ripley/R/test-dev/BH/include/boost/multiprecision/cpp_int.hpp:19,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Quotient.h:37,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Kernel_d/Cartesian_const_iterator_d.h:20,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Homogeneous/VectorH2.h:23,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Homogeneous/predicates_on_directionsH2.h:22,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Homogeneous/DirectionH2.h:100,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Homogeneous/Homogeneous_base.h:29,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Simple_homogeneous.h:20,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Exact_kernel_selector.h:24,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Filtered_kernel.h:22,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Exact_predicates_inexact_constructions_kernel.h:21,
from Apollonius.cpp:7:
/data/gannet/ripley/R/test-dev/BH/include/boost/math/cstdfloat/cstdfloat_cmath.hpp:714:16: warning: non-standard suffix on floating constant [-Wpedantic]
714 | else if (x == BOOST_FLOAT128_C(0.0))
| ^~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/math/cstdfloat/cstdfloat_cmath.hpp:717:16: warning: non-standard suffix on floating constant [-Wpedantic]
717 | if (::BOOST_CSTDFLOAT_FLOAT128_FABS(x) < BOOST_CSTDFLOAT_FLOAT128_MIN)
| ^~
In file included from /data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:18,
from /data/gannet/ripley/R/test-dev/BH/include/boost/property_map/vector_property_map.hpp:14,
from /data/gannet/ripley/R/test-dev/BH/include/boost/property_map/property_map.hpp:598,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/property_map.h:18,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Spatial_sort_traits_adapter_2.h:19,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Triangulation_2.h:38,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Apollonius_graph_2.h:34,
from Apollonius.cpp:3:
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/local/gcc14/include/c++/14.2.0/bits/std_thread.h:43,
from /usr/local/gcc14/include/c++/14.2.0/thread:45,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/config.h:420,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/license/Apollonius_graph_2.h:17,
from /data/gannet/ripley/R/test-dev/RcppCGAL/include/CGAL/Apollonius_graph_2.h:18:
/usr/local/gcc14/include/c++/14.2.0/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
508 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
521 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
604 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
613 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)':
/data/gannet/ripley/R/test-dev/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: 'template<class> class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
615 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
/usr/local/gcc14/include/c++/14.2.0/bits/unique_ptr.h:59:28: note: declared here
59 | template<typename> class auto_ptr;
| ^~~~~~~~
g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o Apollonius.so Apollonius.o RcppExports.o -lmpfr -lgmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Apollonius/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/Apollonius/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/Apollonius/src'
installing to /data/gannet/ripley/R/packages/tests-devel/Apollonius.Rcheck/00LOCK-Apollonius/00new/Apollonius/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Apollonius)