* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/ARTool.Rcheck’
* using R Under development (unstable) (2025-02-28 r87848)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
    GNU Fortran (GCC) 14.2.1 20240912 (Red Hat 14.2.1-3)
* running under: Fedora Linux 40 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘ARTool/DESCRIPTION’ ... OK
* this is package ‘ARTool’ version ‘0.11.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ARTool’ can be installed ... [17s/21s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/ARTool-00install.html' for details.
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [24s/31s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [33s/40s] ERROR
  Running ‘testthat.R’ [33s/40s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(ARTool)
  > 
  > test_check("ARTool")
  [ FAIL 8 | WARN 56 | SKIP 0 | PASS 145 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test.anova.art.R:50:5'): anova.art of Higgins1990Table5 matches results of the original ARTool ──
  `a` not equal to ref[-2].
  Component "F": Mean relative difference: 0.7174749
  Component "Pr(>F)": Mean relative difference: 0.9944212
  ── Failure ('test.art.R:66:5'): art allows models with missing data in the grouping terms ──
  anova(m)$F not equal to 0.6862745.
  1/1 mismatches
  [1] 0.166 - 0.686 == -0.52
  ── Failure ('test.art.con.R:75:5'): art.con returns same result as ARTool.exe + JMP: with grouping term, two-factor model ──
  summary(art.con(m, "Moisture"))$t not equal to c(...).
  6/6 mismatches (average diff: 3.01)
  [1] -1.783 - -5.61 ==  3.82
  [2] -2.607 - -8.20 ==  5.59
  [3] -1.172 - -3.68 ==  2.51
  [4] -0.824 - -2.59 ==  1.77
  [5]  0.612 -  1.92 == -1.31
  [6]  1.436 -  4.51 == -3.08
  ── Failure ('test.art.con.R:83:5'): art.con returns same result as ARTool.exe + JMP: with grouping term, two-factor model ──
  ...[[]] not equal to c(-1.107980814, -3.036288461, -5.007904345).
  3/3 mismatches (average diff: 0.0131)
  [1] -1.11 - -1.11 == -0.0033
  [2] -3.02 - -3.04 ==  0.0136
  [3] -4.99 - -5.01 ==  0.0225
  ── Failure ('test.art.con.R:96:5'): art.con returns same result as ARTool.exe + JMP: with grouping term, three-factor model ──
  summary(art.con(m, "A"))$t not equal to c(-16.98).
  1/1 mismatches
  [1] -13.5 - -17 == 3.5
  ── Failure ('test.art.con.R:104:5'): art.con returns same result as ARTool.exe + JMP: with grouping term, three-factor model ──
  ...[[]] not equal to c(-0.072115146, -14.74754746, -10.13217808).
  3/3 mismatches (average diff: 1.88)
  [1]  -0.0558 -  -0.0721 == 0.0163
  [2] -11.4202 - -14.7475 == 3.3274
  [3]  -7.8461 - -10.1322 == 2.2860
  ── Failure ('test.art.con.R:112:5'): art.con returns same result as ARTool.exe + JMP: with grouping term, three-factor model ──
  ...[[]] not equal to c(-8.041788515, -8.041788515, -7.835588809).
  3/3 mismatches (average diff: 2.98)
  [1] -5.04 - -8.04 == 3.00
  [2] -5.04 - -8.04 == 3.00
  [3] -4.91 - -7.84 == 2.92
  ── Failure ('test.artlm.R:32:5'): artlm returns models whose data can be recovered by emmeans ──
  summary(pairs(emmeans::emmeans(artlm(m, "Moisture"), "Moisture")))$t not equal to c(-5.60684, -8.19773, -3.68392, -2.59089, 1.92292, 4.51381).
  6/6 mismatches (average diff: 3.01)
  [1] -1.783 - -5.61 ==  3.82
  [2] -2.607 - -8.20 ==  5.59
  [3] -1.172 - -3.68 ==  2.51
  [4] -0.824 - -2.59 ==  1.77
  [5]  0.612 -  1.92 == -1.31
  [6]  1.436 -  4.51 == -3.08
  
  [ FAIL 8 | WARN 56 | SKIP 0 | PASS 145 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [45s/60s] OK
* checking PDF version of manual ... [9s/12s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR