• using R Under development (unstable) (2025-03-06 r87893)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     clang version 20.1.0     flang version 20.1.0
• running under: Fedora Linux 40 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘wxgenR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘wxgenR’ version ‘1.4.2’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘wxgenR’ can be installed ... [22s/57s] OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [6s/15s] OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... [5s/12s] OK
• checking whether the namespace can be loaded with stated dependencies ... [5s/10s] OK
• checking whether the namespace can be unloaded cleanly ... [6s/14s] OK
• checking loading without being on the library search path ... [6s/15s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [32s/84s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [9s/24s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [92s/239s] ERROR Error(s) in re-building vignettes: --- re-building ‘Vignette_BlacksburgVA.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/wxgenR.Rcheck/vign_test/wxgenR/vignettes/Vignette_BlacksburgVA_files/figure-html/unnamed-chunk-9-1.png 768x768 pixels, 3x8 bits/pixel, RGB Input IDAT size = 209893 bytes Input file size = 210271 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 200221   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 200221 Output IDAT size = 200221 bytes (9672 bytes decrease) Output file size = 200299 bytes (9972 bytes = 4.74% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/wxgenR.Rcheck/vign_test/wxgenR/vignettes/Vignette_BlacksburgVA_files/figure-html/unnamed-chunk-10-1.png 768x768 pixels, 3x8 bits/pixel, RGB Input IDAT size = 235973 bytes Input file size = 236387 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 226320   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 226320 Output IDAT size = 226320 bytes (9653 bytes decrease) Output file size = 226398 bytes (9989 bytes = 4.23% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/wxgenR.Rcheck/vign_test/wxgenR/vignettes/Vignette_BlacksburgVA_files/figure-html/unnamed-chunk-12-1.png 768x768 pixels, 3x8 bits/pixel, RGB Input IDAT size = 95451 bytes Input file size = 95661 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 75420   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 75420 Output IDAT size = 75420 bytes (20031 bytes decrease) Output file size = 75498 bytes (20163 bytes = 21.08% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/wxgenR.Rcheck/vign_test/wxgenR/vignettes/Vignette_BlacksburgVA_files/figure-html/unnamed-chunk-13-1.png 768x768 pixels, 3x8 bits/pixel, RGB Input IDAT size = 89659 bytes Input file size = 89857 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 71030   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 71030 Output IDAT size = 71030 bytes (18629 bytes decrease) Output file size = 71108 bytes (18749 bytes = 20.87% decrease) --- finished re-building ‘Vignette_BlacksburgVA.Rmd’ --- re-building ‘Vignette_LowerSantaCruzRiverBasinAZ.Rmd’ using rmarkdown Quitting from lines 198-201 [unnamed-chunk-6] (Vignette_LowerSantaCruzRiverBasinAZ.Rmd) Error: processing vignette 'Vignette_LowerSantaCruzRiverBasinAZ.Rmd' failed with diagnostics: The melt generic in data.table has been passed a data.frame and will attempt to redirect to the relevant reshape2 method; please note that reshape2 is superseded and is no longer actively developed, and this redirection is now deprecated. To continue using melt methods from reshape2 while both packages are attached, e.g. melt.list, you can prepend the namespace, i.e. reshape2::melt(.). In the next version, this warning will become an error. --- failed re-building ‘Vignette_LowerSantaCruzRiverBasinAZ.Rmd’ SUMMARY: processing the following file failed:   ‘Vignette_LowerSantaCruzRiverBasinAZ.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR