* installing *source* package ‘wrassp’ ...
** package ‘wrassp’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘clang version 19.1.5’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/wrassp/src'
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/acf.c -o assp/acf.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/dataobj.c -o assp/dataobj.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/freqconv.c -o assp/freqconv.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/mhs.c -o assp/mhs.o
assp/mhs.c:448:12: warning: variable 'FILE_IN' set but not used [-Wunused-but-set-variable]
448 | int FILE_IN, FILE_OUT, CREATED, VOICED;
| ^
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/smp2dur.c -o assp/smp2dur.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/asspana.c -o assp/asspana.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/diff.c -o assp/diff.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/headers.c -o assp/headers.o
assp/headers.c:882:12: warning: variable 'blockSize' set but not used [-Wunused-but-set-variable]
882 | uint32_t blockSize;
| ^
assp/headers.c:1231:12: warning: variable 'peakMag' set but not used [-Wunused-but-set-variable]
1231 | int16_t peakMag;
| ^
assp/headers.c:1828:12: warning: variable 'byteRate' set but not used [-Wunused-but-set-variable]
1828 | uint32_t byteRate, lspPosMask;
| ^
assp/headers.c:1828:22: warning: variable 'lspPosMask' set but not used [-Wunused-but-set-variable]
1828 | uint32_t byteRate, lspPosMask;
| ^
assp/headers.c:2824:7: warning: unused variable 'prev_header_length' [-Wunused-variable]
2824 | int prev_header_length = strlen(header);
| ^~~~~~~~~~~~~~~~~~
assp/headers.c:875:11: warning: unused function 'getAIFhdr' [-Wunused-function]
875 | LOCAL int getAIFhdr(DOBJ *dop)
| ^~~~~~~~~
6 warnings generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/miscstring.c -o assp/miscstring.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/spectra.c -o assp/spectra.o
assp/spectra.c:734:13: warning: unused variable 'gd' [-Wunused-variable]
734 | SPECT_GD *gd;
| ^~
assp/spectra.c:932:23: warning: unused variable 'M' [-Wunused-variable]
932 | register long n, N, M, L;
| ^
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/asspfio.c -o assp/asspfio.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/dsputils.c -o assp/dsputils.o
2 warnings generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/isgerman.c -o assp/isgerman.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/myrand.c -o assp/myrand.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/statistics.c -o assp/statistics.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/asspmess.c -o assp/asspmess.o
assp/asspmess.c:168:9: warning: unused variable 'msg' [-Wunused-variable]
168 | char *msg, *bug, indent[16];
| ^~~
assp/asspmess.c:168:15: warning: unused variable 'bug' [-Wunused-variable]
168 | char *msg, *bug, indent[16];
| ^~~
assp/asspmess.c:168:20: warning: unused variable 'indent' [-Wunused-variable]
168 | char *msg, *bug, indent[16];
| ^~~~~~
assp/asspmess.c:169:9: warning: unused variable 'funcVal' [-Wunused-variable]
169 | int funcVal;
| ^~~~~~~
assp/statistics.c:475:10: warning: unused variable 'format' [-Wunused-variable]
475 | char format[32];
| ^~~~~~
assp/statistics.c:476:10: warning: unused variable 'nd' [-Wunused-variable]
476 | int nd, nd1;
| ^~
assp/statistics.c:476:14: warning: unused variable 'nd1' [-Wunused-variable]
476 | int nd, nd1;
| ^~~
assp/statistics.c:477:10: warning: unused variable 'i' [-Wunused-variable]
477 | size_t i;
| ^
assp/statistics.c:478:10: warning: unused variable 'centre' [-Wunused-variable]
478 | double centre;
| ^~~~~~
4 warnings generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/fft.c -o assp/fft.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/ksv.c -o assp/ksv.o
5 warnings generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/myrint.c -o assp/myrint.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/trace.c -o assp/trace.o
assp/ksv.c:503:16: warning: unused variable 'nd' [-Wunused-variable]
503 | int err, nd, n, type;
| ^~
assp/ksv.c:503:20: warning: unused variable 'n' [-Wunused-variable]
503 | int err, nd, n, type;
| ^
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/aucheck.c -o assp/aucheck.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/fgetl.c -o assp/fgetl.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/labelobj.c -o assp/labelobj.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/numdecim.c -o assp/numdecim.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/winfuncs.c -o assp/winfuncs.o
2 warnings generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/auconv.c -o assp/auconv.o
assp/winfuncs.c:1137:11: warning: unused variable 'l' [-Wunused-variable]
1137 | int l, m;
| ^
assp/winfuncs.c:1137:14: warning: unused variable 'm' [-Wunused-variable]
1137 | int l, m;
| ^
assp/winfuncs.c:1138:11: warning: unused variable 'wPtr' [-Wunused-variable]
1138 | WFLIST *wPtr;
| ^~~~
assp/winfuncs.c:1139:11: warning: unused variable 'specs' [-Wunused-variable]
1139 | WFDATA *specs;
| ^~~~~
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/filter.c -o assp/filter.o
4 warnings generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/lpc.c -o assp/lpc.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/parsepath.c -o assp/parsepath.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/zcr.c -o assp/zcr.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/bitarray.c -o assp/bitarray.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/filters.c -o assp/filters.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/math.c -o assp/math.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/rfc.c -o assp/rfc.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/chain.c -o assp/chain.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/fmt.c -o assp/fmt.o
assp/fmt.c:1795:11: warning: unused function 'printRaw' [-Wunused-function]
1795 | LOCAL int printRaw(FMTDATA *fPtr, long frameNr, int numFMT, DOBJ *dop)
| ^~~~~~~~
1 warning generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/memswab.c -o assp/memswab.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c assp/rms.c -o assp/rms.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c dataobj.c -o dataobj.o
dataobj.c:56:21: warning: variable 'i' set but not used [-Wunused-but-set-variable]
56 | int i;
| ^
dataobj.c:170:21: warning: unused variable 'genVar' [-Wunused-variable]
170 | TSSFF_Generic *genVar = NULL;
| ^~~~~~
dataobj.c:397:21: warning: variable 'i' set but not used [-Wunused-but-set-variable]
397 | int i,
| ^
dataobj.c:405:21: warning: variable 'i8Ptr' set but not used [-Wunused-but-set-variable]
405 | int8_t *i8Ptr;
| ^
dataobj.c:602:21: warning: unused variable 'numFields' [-Wunused-variable]
602 | size_t numFields = -1;
| ^~~~~~~~~
dataobj.c:608:21: warning: unused variable 'varNames' [-Wunused-variable]
608 | varNames;
| ^~~~~~~~
dataobj.c:886:21: warning: variable 'i' set but not used [-Wunused-but-set-variable]
886 | int i,
| ^
dataobj.c:894:21: warning: variable 'i8Ptr' set but not used [-Wunused-but-set-variable]
894 | int8_t *i8Ptr;
| ^
dataobj.c:142:1: warning: unused function 'DObjFinalizer' [-Wunused-function]
142 | DObjFinalizer(SEXP dPtr)
| ^~~~~~~~~~~~~
9 warnings generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c performAssp.c -o performAssp.o
performAssp.c:554:14: warning: variable 'i' set but not used [-Wunused-but-set-variable]
554 | for (int i = 0; args != R_NilValue; i++, args = CDR(args)) {
| ^
performAssp.c:1231:21: warning: variable 'FILE_IN' set but not used [-Wunused-but-set-variable]
1231 | int FILE_IN,
| ^
2 warnings generated.
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c types.c -o types.o
/usr/local/clang19/bin/clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I assp -DWRASSP -isystem /usr/local/clang19/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3 -c wrassp_init.c -o wrassp_init.o
/usr/local/clang19/bin/clang -shared -L/usr/local/clang/lib64 -L/usr/local/clang19/lib -L/usr/local/clang19/lib/x86_64-unknown-linux-gnu -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o wrassp.so assp/acf.o assp/dataobj.o assp/freqconv.o assp/mhs.o assp/smp2dur.o assp/asspana.o assp/diff.o assp/headers.o assp/miscstring.o assp/spectra.o assp/asspfio.o assp/dsputils.o assp/isgerman.o assp/myrand.o assp/statistics.o assp/asspmess.o assp/fft.o assp/ksv.o assp/myrint.o assp/trace.o assp/aucheck.o assp/fgetl.o assp/labelobj.o assp/numdecim.o assp/winfuncs.o assp/auconv.o assp/filter.o assp/lpc.o assp/parsepath.o assp/zcr.o assp/bitarray.o assp/filters.o assp/math.o assp/rfc.o assp/chain.o assp/fmt.o assp/memswab.o assp/rms.o dataobj.o performAssp.o types.o wrassp_init.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/wrassp/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/wrassp/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/wrassp/src'
installing to /data/gannet/ripley/R/packages/tests-clang/wrassp.Rcheck/00LOCK-wrassp/00new/wrassp/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (wrassp)